Sequences for HUMAN02975

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN02975 (VTI1A_HUMAN)

E Homo sapiens | Vesicle transport through interaction with t-SNARE [VTI1A]

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Orthologs 952

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 374
Gene information
GO Annotations
Sequences/Isoforms 2
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	HUMAN02976	203			8	VTI1A_HUMAN
	HUMAN02975 reference isoform	217			8	VTI1A_HUMAN

Protein Sequence

Download: Fasta

MSSDFEGYEQ DFAVLTAEIT SKIARVPRLP PDEKKQMVAN VEKQLEEAKE LLEQMDLEVR    60
EIPPQSRGMY SNRMRSYKQE MGKLETDFKR SRIAYSDEVR NELLGDDGNS SENQRAHLLD   120
NTERLERSSR RLEAGYQIAV ETEQIGQEML ENLSHDREKI QRARERLRET DANLGKSSRI   180
LTGMLRRIIQ NRILLVILGI IVVITILMAI TFSVRRH                            217

cDNA Sequence

Download: Fasta

ATGTCGTCCG ACTTCGAAGG TTACGAGCAG GACTTCGCGG TGCTCACTGC AGAGATCACC    60
AGCAAGATTG CGAGGGTCCC ACGACTCCCG CCTGATGAAA AGAAACAGAT GGTTGCAAAT   120
GTGGAGAAAC AGCTTGAAGA AGCGAAAGAA CTGCTTGAAC AGATGGATTT GGAAGTCCGA   180
GAGATACCAC CCCAAAGTCG AGGGATGTAC AGCAACAGAA TGAGAAGCTA CAAACAAGAA   240
ATGGGAAAAC TCGAAACAGA TTTTAAAAGG TCACGGATCG CCTACAGTGA CGAAGTACGG   300
AATGAGCTCC TGGGGGATGA TGGGAATTCC TCAGAGAACC AGAGGGCACA TCTGCTCGAT   360
AACACAGAGA GGCTGGAAAG GTCATCTCGG AGACTAGAGG CTGGATACCA AATAGCAGTG   420
GAAACCGAGC AAATTGGTCA GGAGATGTTG GAAAACCTTA GTCATGACAG AGAAAAGATA   480
CAGCGAGCAC GTGAAAGACT TCGGGAAACA GATGCTAATT TGGGAAAAAG CTCCAGGATT   540
CTGACAGGGA TGTTGCGAAG AATCATCCAG AACCGCATCC TGCTCGTCAT CCTAGGGATC   600
ATCGTGGTCA TCACCATCCT GATGGCGATC ACTTTTTCTG TCAGAAGACA CTGA         654