Sequences for GORGO01016

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene GORGO01016 (MBL2_GORGO)

E Gorilla gorilla gorilla | Mannose-binding protein C [MBL2]

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Orthologs 104

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 58
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	GORGO01016 reference isoform	248			4	MBL2_GORGO

Protein Sequence

Download: Fasta

MSLFPSLPLL LLSMVAASYS ETVTCEDAQK TCPAVIACSS PGINGFPGKD GRDGTKGEKG    60
EPGQGLRGLQ GPPGKLGPPG NPGPSGSPGP KGQKGDPGKS PDGDSSLAAS ERKALQTEMA   120
RIKKWLTFSL GKQVGNKFFL TNGEIMTFEK VKALCVKFQA SVATPRNAAE NGAIRNLIKE   180
EAFLGITDEK TEGQFVDLTG NRLTYTNWNE GEPNNAGSDE DCVLLLKNGQ WNDVPCSTSH   240
LAVCEFPI                                                            248

cDNA Sequence

Download: Fasta

ATGTCCCTGT TTCCATCACT CCCTCTCCTT CTCCTGAGTA TGGTGGCAGC GTCTTACTCA    60
GAAACTGTGA CCTGTGAGGA TGCCCAAAAG ACCTGTCCTG CAGTGATTGC CTGTAGCTCT   120
CCAGGCATCA ACGGCTTCCC AGGCAAAGAT GGGCGTGATG GCACCAAGGG AGAAAAGGGG   180
GAACCAGGCC AAGGGCTCAG AGGCTTACAG GGCCCTCCTG GAAAGTTGGG GCCTCCAGGA   240
AATCCAGGGC CTTCTGGGTC ACCAGGACCA AAGGGCCAAA AAGGAGACCC TGGAAAAAGT   300
CCGGATGGTG ATAGTAGCCT GGCTGCCTCA GAAAGAAAAG CTCTGCAAAC AGAAATGGCA   360
CGTATCAAAA AGTGGCTGAC CTTCTCTCTG GGCAAACAAG TTGGGAACAA GTTCTTCCTG   420
ACCAATGGTG AAATAATGAC CTTTGAAAAA GTGAAGGCCT TGTGTGTCAA GTTCCAGGCC   480
TCTGTGGCCA CCCCCAGGAA TGCTGCAGAG AATGGAGCCA TTCGGAATCT CATCAAGGAG   540
GAAGCCTTCC TGGGCATCAC TGATGAGAAG ACAGAAGGGC AGTTTGTGGA TCTGACAGGA   600
AATAGACTGA CCTACACAAA CTGGAACGAG GGTGAACCCA ACAATGCTGG TTCTGATGAA   660
GATTGTGTAT TGCTACTGAA AAATGGCCAG TGGAATGACG TCCCCTGCTC CACCTCCCAT   720
CTGGCCGTCT GTGAGTTCCC TATCTGA                                       747