Sequences for FICAL06053

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Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene FICAL06053 (A0A803V6X6)

E Ficedula albicollis | Glucosamine-6-phosphate isomerase [GNPDA1]

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Orthologs 1462

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 242
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	FICAL06053 reference isoform	288			6	A0A803V6X6

Protein Sequence

Download: Fasta

MKLIILENYS QASEWAAKYI RNRIVQFGPG PGRFFTLGLP TGSTPLGCYG KLVEYYRNGD    60
LSFKYVKTFN MDEYVGLPRD HPESYHSFMW NNFFKHIDIS PENVHILDGN APDLQAECDA   120
FEEKIKAAGG IELFVGGIGP DGHIAFNEPG SSLVSRTRVK TLAMDTILAN ARFFDGDLSK   180
VPTMALTVGV GTVMDAREVM ILITGAHKAF ALYKAIEDGV NHMWTVSAFQ QHPNTVFVCD   240
EDATLELKVK TVKYFKGLML VHNKLVEPLY SMKEMGTERS QSKKPYSD                288

cDNA Sequence

Download: Fasta

ATGAAGTTGA TCATCCTGGA GAATTACTCT CAGGCCAGCG AGTGGGCGGC CAAGTACATC    60
CGCAACCGCA TCGTGCAGTT CGGGCCGGGC CCCGGGCGCT TCTTCACGCT GGGGCTGCCC   120
ACAGGCAGCA CCCCGCTGGG CTGCTACGGC AAACTGGTGG AGTATTACCG CAACGGCGAC   180
CTCTCCTTCA AGTACGTGAA GACTTTCAAC ATGGACGAGT ACGTGGGTCT CCCAAGGGAT   240
CACCCAGAGA GTTACCATTC CTTCATGTGG AACAACTTCT TCAAGCACAT TGACATCTCA   300
CCAGAAAACG TCCACATCTT GGATGGAAAT GCCCCTGATC TCCAGGCTGA GTGTGATGCA   360
TTTGAGGAGA AGATCAAGGC AGCTGGAGGC ATCGAGCTCT TTGTTGGAGG CATTGGCCCC   420
GATGGTCACA TCGCCTTCAA CGAGCCAGGA TCCAGTCTGG TGTCCAGGAC ACGAGTGAAG   480
ACCTTGGCCA TGGACACCAT ACTGGCCAAT GCCAGGTTCT TTGATGGTGA CCTCTCCAAA   540
GTGCCCACCA TGGCTTTGAC AGTTGGAGTA GGCACTGTCA TGGATGCCAG AGAGGTGATG   600
ATCCTGATCA CAGGAGCCCA CAAAGCCTTT GCTCTGTACA AAGCCATCGA GGATGGTGTG   660
AACCACATGT GGACGGTGTC GGCCTTCCAG CAGCACCCCA ACACCGTGTT CGTGTGCGAC   720
GAGGACGCCA CGCTGGAGCT CAAAGTCAAA ACAGTCAAAT ACTTCAAAGG TTTAATGCTG   780
GTTCACAACA AGCTCGTGGA GCCCTTGTAC AGCATGAAGG AGATGGGAAC AGAGAGGAGC   840
CAGTCCAAGA AGCCATACAG TGATTAA                                       867