Sequences for FICAL04998

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
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Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene FICAL04998 (U3JN15)

E Ficedula albicollis | Phosphomannomutase [PMM2]

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Orthologs 816

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 259
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	FICAL04998 reference isoform	220			7	U3JN15

Protein Sequence

Download: Fasta

MAAFVQRLRQ KVKVGVVGGS DLAKIREQLG EDVIEKYDYV FAENGLVAYK DGKFLSKQSI    60
QGHLGEDILQ DVINYCLSYI AKIKLPKKRG TFIEFRNGML NVSPIGRSCS QEERLEFYEL   120
DKKEHIREKF VADLQREFEG KGLTFSIGGQ ISIDVFPDGW DKRYCLGIVA KDGYKTIYFF   180
GDKTMPGGND YEIFTDSRTE GHSVTSPQDT RRICEELFFK                         220

cDNA Sequence

Download: Fasta

ATGGCGGCGT TCGTGCAGCG GCTGCGGCAG AAGGTGAAGG TGGGAGTGGT GGGCGGCTCG    60
GACTTGGCCA AGATCCGCGA GCAGCTGGGC GAGGACGTGA TTGAAAAATA TGACTATGTG   120
TTTGCAGAAA ATGGCTTGGT AGCATACAAA GATGGGAAGT TCTTGAGCAA GCAGAGCATT   180
CAGGGCCACC TGGGCGAGGA CATCCTTCAA GATGTCATCA ACTACTGCCT GAGTTACATT   240
GCAAAGATTA AACTTCCAAA GAAGAGAGGC ACTTTCATTG AGTTCCGAAA TGGGATGTTA   300
AATGTGTCCC CCATTGGAAG AAGCTGCAGC CAGGAAGAAC GACTTGAGTT CTATGAACTT   360
GATAAAAAGG AGCATATAAG AGAGAAATTT GTAGCTGATC TACAAAGAGA ATTTGAAGGC   420
AAAGGCCTCA CATTTTCCAT AGGAGGGCAG ATAAGCATTG ATGTGTTCCC AGATGGCTGG   480
GATAAAAGGT ACTGCTTAGG AATTGTTGCC AAGGATGGAT ACAAGACTAT TTATTTCTTT   540
GGAGACAAGA CCATGCCAGG AGGGAATGAC TATGAAATTT TCACAGACTC CAGGACAGAA   600
GGCCACAGTG TCACATCCCC ACAGGATACA AGAAGAATCT GTGAAGAGCT GTTTTTTAAA   660
TAA                                                                 663