Sequences for DROPS08931

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene DROPS08931 (Q2LZP4)

E Drosophila pseudoobscura pseudoobscura | 60S ribosomal protein L23a [LOC4813605]

‹

Orthologs 479

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 861
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	DROPS08931 reference isoform	266			3	Q2LZP4

Protein Sequence

Download: Fasta

MPPKKPTEKS AKPGDKKPEQ KKAAAPAAAK KEAPAAAKPA AAAPKKAAAP VKKPATAAVK    60
KPTAVKKVAT KAKPKVKDAK KKLAAGKKPQ SVLAKLSAKA RAAAKAKKAV KVGAKPAKGT   120
AKAKAVALLN AKKVQKKIIK GAFGTRTRKV RTNVHFRRPT TLKLPRNPKY PRKSVPTRNR   180
MDAYNIIKYP LTTEAAMKKI EDNNTLVFLT HLRANKNHVR AAVRKLYDIK VAKVNVLIRP   240
DGQKKAYVRL ARDYDALDIA NKIGII                                        266

cDNA Sequence

Download: Fasta

ATGCCACCCA AAAAGCCAAC TGAGAAATCC GCCAAGCCTG GCGATAAGAA GCCAGAGCAG    60
AAGAAGGCTG CGGCCCCGGC TGCTGCCAAG AAGGAGGCAC CAGCTGCTGC CAAGCCCGCG   120
GCTGCTGCTC CCAAGAAGGC GGCTGCTCCT GTCAAGAAGC CAGCTACCGC TGCTGTCAAG   180
AAGCCCACAG CCGTGAAGAA GGTGGCAACC AAGGCCAAGC CAAAGGTCAA GGATGCCAAG   240
AAGAAGCTGG CTGCAGGCAA GAAGCCACAG TCGGTGCTGG CCAAGCTCTC GGCTAAGGCT   300
CGCGCTGCCG CTAAGGCTAA GAAGGCAGTC AAGGTTGGTG CTAAGCCCGC CAAGGGCACT   360
GCTAAGGCCA AGGCTGTTGC TCTGCTGAAC GCCAAGAAGG TCCAGAAGAA GATCATCAAG   420
GGCGCTTTCG GTACCCGCAC TCGCAAGGTC CGCACCAACG TGCACTTCCG TCGTCCCACG   480
ACCTTGAAGC TGCCCCGTAA CCCCAAGTAC CCCAGGAAGT CGGTGCCCAC CAGGAACCGC   540
ATGGATGCTT ACAATATCAT CAAGTACCCC TTGACCACAG AAGCAGCCAT GAAGAAGATT   600
GAGGACAACA ACACCCTGGT CTTCCTCACG CACCTGCGCG CCAACAAGAA CCACGTGCGT   660
GCTGCGGTCC GCAAGCTCTA TGACATCAAG GTAGCCAAGG TGAACGTTCT GATCAGACCC   720
GATGGTCAGA AGAAGGCTTA TGTGCGCCTG GCGCGTGACT ACGATGCTCT AGATATTGCC   780
AACAAGATCG GCATCATATA G                                             801