Sequences for DROPS01828

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For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene DROPS01828 (Q29JS2)

E Drosophila pseudoobscura pseudoobscura | Sex-regulated protein janus-B [LOC4816257]

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Orthologs 33

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	DROPS01828 reference isoform	149			3	Q29JS2

Protein Sequence

Download: Fasta

MDITRNLLLP TWRPLLRAIR GPRSYSDSAV ASLLKFPSVT LEEGKSKYVL SHVYIHGMMG    60
QARQVIRSCP RAKYHLNIYE TLKKEANKLG LCTQGLGGGY IEYDPQKKYI KVYGKSGVLG   120
KADHKKSQAI LHKAYPDVKI DAERGSMKP                                     149

cDNA Sequence

Download: Fasta

ATGGATATAA CCCGAAACCT CCTTTTGCCC ACCTGGCGTC CTCTACTGCG GGCCATTCGT    60
GGGCCACGTT CGTATAGTGA CAGTGCAGTG GCATCCCTGC TCAAATTCCC TTCGGTCACG   120
TTGGAGGAAG GAAAGTCCAA ATATGTGCTG TCCCACGTCT ATATCCATGG TATGATGGGC   180
CAGGCCAGGC AGGTGATTCG CAGCTGCCCC AGAGCCAAGT ACCATTTGAA TATCTATGAA   240
ACACTTAAAA AGGAGGCCAA CAAATTGGGT TTGTGCACCC AGGGCCTGGG CGGCGGCTAT   300
ATCGAATATG ATCCGCAGAA GAAATACATT AAGGTCTATG GCAAATCGGG AGTCTTGGGC   360
AAGGCCGATC ATAAGAAGTC CCAGGCCATT TTGCATAAGG CTTATCCAGA CGTTAAGATC   420
GATGCAGAGC GCGGGAGTAT GAAGCCCTAA                                    450