Sequences for DROPS01420

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene DROPS01420 (FBgn0073753)

E Drosophila pseudoobscura pseudoobscura

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Orthologs 27

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 1
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	DROPS01420 reference isoform	234			2	FBgn0073753

Protein Sequence

Download: Fasta

MALKKNVKTR VMPKKKAKTA PVSKKKSQKV SKSSSKQQSQ LKTLFRASNF KTAPQSNPVK    60
RQAPVPPNQR VWRKTIVRTK PKKEAKLPRL FRADRRTGLP LDYERTVEHV MNYVNPYIGS   120
RRRRTPEEEL EEVMANMFVQ LVQHGPDHQD PCEITQKLCS MLQNARKDKG HCNGKCDCQM   180
WKCTNNGRNE GLKQNAALSD FYSACKRGPA RTGSPLGPTR KSRFNYNQLK IKST         234

cDNA Sequence

Download: Fasta

ATGGCTCTCA AGAAGAATGT AAAGACCAGG GTGATGCCCA AAAAGAAAGC AAAGACTGCC    60
CCAGTATCCA AGAAGAAGTC CCAAAAGGTT TCAAAGTCAA GCTCCAAGCA GCAGAGCCAG   120
CTTAAGACTC TGTTCAGAGC CTCAAATTTT AAGACCGCGC CCCAAAGCAA TCCTGTCAAG   180
CGTCAGGCGC CAGTGCCGCC CAACCAGCGC GTGTGGCGCA AGACGATCGT CCGCACCAAG   240
CCGAAGAAGG AGGCCAAGCT GCCAAGACTC TTTCGAGCGG ACCGTCGCAC CGGCCTGCCC   300
CTCGACTACG AGCGCACAGT GGAGCACGTG ATGAACTATG TGAATCCCTA TATCGGCAGC   360
AGGCGGCGAC GCACTCCTGA GGAGGAGCTG GAGGAAGTTA TGGCCAATAT GTTCGTGCAG   420
TTGGTTCAGC ACGGACCTGA TCATCAGGAT CCCTGCGAAA TAACCCAAAA ACTGTGCTCG   480
ATGCTGCAGA ATGCCAGAAA AGACAAAGGC CACTGCAATG GCAAGTGCGA CTGCCAGATG   540
TGGAAGTGCA CCAATAATGG TCGTAATGAA GGGCTCAAGC AGAACGCAGC TCTAAGCGAT   600
TTCTACAGCG CCTGCAAACG AGGACCCGCG CGGACCGGCA GCCCCTTGGG TCCCACCCGG   660
AAGAGCAGAT TCAACTACAA CCAACTGAAA ATTAAGAGCA CCTAG                   705