Sequences for ECOLI00301

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ECOLI00301 (YAHN_ECOLI)

B Escherichia coli str. K-12 substr. MG1655 | Uncharacterized membrane protein YahN [yahN]

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Orthologs 969

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 2670
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	ECOLI00301 reference isoform	223			1	YAHN_ECOLI

Protein Sequence

Download: Fasta

MMQLVHLFMD EITMDPLHAV YLTVGLFVIT FFNPGANLFV VVQTSLASGR RAGVLTGLGV    60
ALGDAFYSGL GLFGLATLIT QCEEIFSLIR IVGGAYLLWF AWCSMRRQST PQMSTLQQPI   120
SAPWYVFFRR GLITDLSNPQ TVLFFISIFS VTLNAETPTW ARLMAWAGIV LASIIWRVFL   180
SQAFSLPAVR RAYGRMQRVA SRVIGAIIGV FALRLIYEGV TQR                     223

cDNA Sequence

Download: Fasta

ATGATGCAGT TAGTTCACTT ATTTATGGAT GAAATCACTA TGGATCCTTT GCATGCCGTT    60
TACCTGACCG TAGGACTGTT CGTGATTACT TTTTTTAATC CGGGAGCCAA TCTCTTTGTG   120
GTAGTACAAA CCAGCCTGGC TTCCGGTCGA CGCGCAGGGG TGCTGACCGG GCTGGGCGTG   180
GCGCTGGGCG ATGCATTTTA TTCCGGGTTG GGTTTGTTTG GTCTTGCAAC GCTAATTACG   240
CAGTGTGAGG AGATTTTTTC GCTTATCAGA ATCGTCGGCG GCGCTTATCT CTTATGGTTT   300
GCGTGGTGCA GCATGCGCCG CCAGTCAACA CCGCAAATGA GCACACTACA ACAACCGATT   360
AGCGCCCCCT GGTATGTCTT TTTTCGCCGC GGATTAATTA CCGATCTCTC TAACCCGCAA   420
ACCGTTTTAT TTTTTATCAG TATTTTCTCA GTAACATTAA ATGCCGAAAC ACCAACATGG   480
GCACGTTTAA TGGCCTGGGC GGGGATTGTG CTCGCATCAA TTATCTGGCG AGTTTTTCTT   540
AGTCAGGCGT TTTCTTTGCC CGCTGTGCGT CGTGCTTATG GGCGTATGCA ACGCGTTGCC   600
AGTCGGGTTA TTGGTGCAAT TATTGGTGTA TTCGCGCTAC GCCTGATTTA CGAAGGGGTG   660
ACGCAGCGGT GA                                                       672