Sequences for ECODH03319

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ECODH03319 (INSJ_ECOLI)

B Escherichia coli (strain K12 / DH10B) | Insertion element IS150 protein InsJ [insJ]

‹

Orthologs 371

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 54
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	ECODH03319 reference isoform	173			1	INSJ_ECOLI

Protein Sequence

Download: Fasta

MSKPKYPFEK RLEVVNHYFT TDDGYRIISA RFGVPRTQVR TWVALYEKHG EKGLIPKPKG    60
VSADPELRIK VVKAVIEQHM SLNQAAAHFM LAGSGSVARW LKVYEERGEA GLRALKIGTK   120
RNIAISVDPE KAASALELSK DRRIEDLERQ VRFLETRLMY LKKLKALAHP TKK          173

cDNA Sequence

Download: Fasta

ATGTCAAAGC CAAAATACCC TTTTGAAAAG CGCCTTGAAG TCGTGAATCA CTACTTCACA    60
ACTGATGATG GTTACAGGAT CATCTCGGCA CGTTTTGGTG TCCCCCGAAC CCAGGTCAGG   120
ACATGGGTTG CCCTCTATGA AAAACATGGA GAAAAAGGTT TAATTCCCAA ACCTAAAGGC   180
GTTAGTGCTG ATCCAGAGTT GCGTATTAAG GTCGTGAAAG CTGTGATCGA GCAGCACATG   240
TCCCTTAATC AGGCTGCTGC TCACTTTATG CTTGCTGGTA GTGGTTCTGT AGCCAGGTGG   300
CTGAAGGTCT ATGAAGAGCG CGGAGAAGCT GGTTTACGCG CGCTCAAGAT TGGCACCAAA   360
AGAAACATTG CAATATCAGT TGATCCAGAA AAAGCGGCAT CAGCATTGGA GCTGTCAAAA   420
GACCGACGCA TTGAGGATCT TGAAAGGCAA GTTCGATTTC TTGAAACGCG GCTTATGTAT   480
CTAAAAAAGC TGAAAGCCTT AGCTCATCCC ACGAAAAAGT GA                      522