Sequences for ECODH02471

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ECODH02471 (YFJJ_ECOLI)

B Escherichia coli (strain K12 / DH10B) | Uncharacterized protein YfjJ [yfjJ]

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Orthologs 119

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 4
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	ECODH02471 reference isoform	208			1	YFJJ_ECOLI

Protein Sequence

Download: Fasta

MTYDSEFGSH VSLYRDRIKQ VIDDSLNEHL NSMILRVDLH DPIDTENMDN PFFQPRVDSG    60
AISRFTSALK AKLKHDKHIK TQRKDWPDSR HSTLRYAWVR EYTKNRKRHY HLILCFNQDA   120
YYHLGDYDLN RNTLRTMITT AWYSALGIPI DSSGKLVNYP PNGKYLLNRK RDNFEQTYSD   180
LMNRVDYMTK VRTKIVGDGD RNFGCSRG                                      208

cDNA Sequence

Download: Fasta

ATGACATACG ATAGTGAATT CGGATCACAT GTATCCCTAT ATCGGGATAG AATCAAACAG    60
GTTATTGATG ACTCCCTAAA CGAACATCTT AACTCAATGA TTCTACGTGT TGATCTGCAT   120
GACCCAATTG ATACAGAAAA TATGGATAAC CCATTCTTTC AACCCAGGGT TGACTCTGGT   180
GCTATATCTC GCTTTACCAG TGCGTTAAAA GCAAAGCTTA AACATGATAA GCATATTAAA   240
ACTCAACGGA AAGACTGGCC TGATAGTCGA CATTCCACTT TACGTTACGC ATGGGTCAGA   300
GAATATACCA AAAATAGAAA GCGGCATTAC CATTTGATAC TGTGTTTCAA TCAGGATGCT   360
TATTATCATT TAGGTGATTA CGACTTAAAC CGTAACACGT TACGTACAAT GATAACGACA   420
GCTTGGTACA GTGCACTTGG CATCCCTATA GATAGCTCGG GGAAGTTAGT TAATTACCCG   480
CCAAATGGCA AATACCTTCT CAATCGTAAA AGGGACAACT TTGAGCAGAC TTATAGCGAT   540
TTGATGAATA GGGTGGATTA CATGACCAAA GTAAGGACTA AAATAGTCGG TGACGGAGAC   600
CGTAATTTCG GCTGCAGTCG CGGGTAA                                       627