Sequences for DANRE38452

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
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HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene DANRE38452 (ENSDARG00000006514.1)

E Danio rerio

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Orthologs 196

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 3
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	DANRE38452 reference isoform	270			4	ENSDARG00000006514.1

Protein Sequence

Download: Fasta

MPADIMEKNS SSPVAATPAS MNTTPDKPKT ASEHRKSSKP IMEKRRRARI NESLGQLKTL    60
ILDALKKDSS RHSKLEKADI LEMTVKHLRN MQRAQMTAAL NTDPTVLGKY RAGFSECMNE   120
VTRFLSTCEG VNTEVRTRLL GHLASCMTQI NAMNYPTQHQ IPAGPPHPSF SQPMVQIPSA   180
TQQANVVPLS GVPCKSGSSS NLTSDATKVY GGFQLVPATD GQFAFLIPNA AFAPNGPVIP   240
VYANNSNTPV PVAVSPGAPS VTSDSVWRPW                                    270

cDNA Sequence

Download: Fasta

ATGCCTGCCG ATATCATGGA AAAAAACTCC TCTTCTCCGG TCGCCGCGAC TCCGGCGAGC    60
ATGAACACTA CACCTGATAA ACCCAAAACG GCTTCGGAAC ACAGAAAGTC TTCTAAACCC   120
ATTATGGAGA AAAGAAGAAG AGCGAGAATC AACGAAAGCT TGGGTCAGCT GAAAACGTTA   180
ATCTTGGATG CTCTGAAAAA AGATAGCTCC AGACACTCTA AACTTGAGAA AGCCGACATC   240
CTGGAGATGA CAGTGAAACA TCTCAGAAAC ATGCAGCGCG CACAAATGAC CGCTGCCCTA   300
AACACAGATC CCACCGTTCT TGGGAAGTAC CGAGCTGGAT TCAGTGAATG CATGAACGAG   360
GTTACCCGGT TCCTGTCCAC ATGTGAAGGG GTTAACACCG AGGTCAGGAC TAGGCTGCTA   420
GGTCACCTAG CCAGCTGCAT GACACAGATC AACGCCATGA ACTATCCAAC ACAGCACCAG   480
ATACCTGCCG GGCCTCCTCA TCCATCCTTC AGTCAACCCA TGGTTCAGAT CCCCAGCGCG   540
ACTCAGCAAG CCAACGTTGT GCCTCTTAGC GGAGTCCCCT GCAAAAGCGG CTCATCCTCC   600
AACTTGACTT CTGACGCAAC TAAAGTATAT GGGGGTTTCC AGCTTGTGCC GGCAACCGAC   660
GGACAGTTCG CCTTTTTGAT TCCCAACGCT GCCTTTGCTC CAAACGGCCC TGTTATTCCA   720
GTCTACGCAA ACAATTCCAA CACACCGGTT CCGGTGGCCG TTTCTCCGGG AGCACCGTCC   780
GTCACGTCAG ACTCCGTTTG GCGGCCTTGG TAG                                813