Sequences for DANRE24157

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene DANRE24157 (Q6P2T9)

E Danio rerio | Tetraspanin [cd63]

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Orthologs 1284

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 667
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	DANRE24157 reference isoform	237			7	Q6P2T9

Protein Sequence

Download: Fasta

MAVEGGAKCV KYLLFFFNFI FWLCGLALIV LGILVHVSLH NTAILQGASG SPMVLIVVGV    60
IIFFISFFGC CGAWKENQCM VVTFAIILSL IVITEIGAGI AGYIFRGKVN ELLDQSFNTM   120
IAGYNKTEEY RTTLDSIQKQ LKCCGGNSSS DWVNFSADHI SVPDSCCKNV TKNCGIGAMT   180
KPTVIYLEGC QPILETRIKE NILWIAVGAL VIGFVQITGI VLACILSRAI RSGYEVM      237

cDNA Sequence

Download: Fasta

ATGGCTGTAG AAGGAGGAGC GAAATGTGTC AAATACCTGC TCTTTTTCTT TAATTTCATC    60
TTCTGGCTGT GTGGCCTGGC CCTCATAGTT CTGGGGATAC TGGTTCACGT TTCTTTGCAC   120
AACACGGCGA TCCTCCAAGG AGCCTCTGGT TCTCCTATGG TGCTGATAGT GGTGGGCGTC   180
ATCATCTTCT TCATCTCTTT CTTCGGCTGC TGTGGTGCCT GGAAGGAAAA TCAGTGCATG   240
GTCGTTACGT TTGCAATCAT TCTCTCCCTC ATCGTCATTA CTGAAATTGG AGCCGGCATT   300
GCTGGATATA TCTTCCGTGG AAAAGTGAAT GAACTGCTTG ATCAGAGCTT TAACACCATG   360
ATTGCAGGAT ACAACAAGAC AGAGGAATAC CGCACAACCC TCGATTCTAT ACAGAAGCAG   420
CTCAAGTGCT GTGGAGGAAA CTCCTCTAGT GATTGGGTGA ACTTCAGTGC TGATCACATT   480
TCGGTCCCAG ATTCCTGCTG TAAAAACGTC ACTAAGAACT GTGGTATTGG AGCTATGACG   540
AAACCCACCG TAATCTACTT AGAGGGTTGT CAACCTATTT TGGAGACACG CATAAAGGAA   600
AATATTTTGT GGATTGCTGT GGGAGCTCTG GTCATTGGAT TTGTGCAGAT TACAGGCATT   660
GTGTTGGCCT GCATTTTGTC ACGAGCCATC CGCAGCGGCT ATGAGGTCAT GTGA         714