Sequences for DANRE23522

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene DANRE23522 (ENSDARG00000028896.9)

E Danio rerio

‹

Orthologs 288

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 1040
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	DANRE23522 reference isoform	276			6	ENSDARG00000028896.9

Protein Sequence

Download: Fasta

MSDMGKKKLF VLVDVMCVVV ASLPFVAMTI ASHPYERGIF CQDESIGYPV KTDTITNVTL    60
AAVTITCTIL IICSGEAYLV YSKKIHSNSS FNQYVSAIYK VLGAFLFGGA VSQSLTDLAK   120
YTIGRPRPNF LAVCAPKVCK GFVNLNNCTG NPADVTEARL SFYSGHSSFA MYCMLFLAFY   180
VQARLNAKWA RLLRPTIQFF LVAFAVYVGY TRVSDYKHHW SDVMVGLLQG ALIAILTVRF   240
VSNFFKVSPS PECSNQENAV NEERKPSNSY RYSGPV                             276

cDNA Sequence

Download: Fasta

ATGTCGGACA TGGGGAAAAA GAAACTCTTC GTCCTGGTGG ACGTGATGTG TGTTGTTGTA    60
GCATCTCTGC CCTTTGTGGC AATGACTATT GCATCTCATC CGTACGAGCG AGGAATCTTC   120
TGCCAGGACG AGAGCATTGG TTACCCAGTG AAAACCGACA CCATCACTAA TGTGACTCTG   180
GCTGCAGTCA CCATCACCTG CACCATCCTC ATAATCTGTT CGGGTGAAGC ATATCTGGTG   240
TACAGCAAAA AAATCCACTC CAACTCCTCT TTTAATCAAT ATGTGTCAGC AATCTATAAA   300
GTGTTGGGCG CGTTCCTGTT TGGAGGAGCT GTCAGCCAAT CACTGACAGA CCTGGCCAAG   360
TACACCATTG GTCGACCACG CCCCAATTTC CTAGCAGTTT GTGCTCCCAA AGTCTGCAAA   420
GGATTCGTGA ACTTGAACAA CTGCACTGGC AACCCTGCAG ATGTGACCGA AGCCCGGTTG   480
TCCTTCTACT CTGGTCACTC CTCCTTCGCG ATGTACTGCA TGCTGTTTCT GGCGTTTTAT   540
GTCCAGGCCA GATTGAATGC GAAATGGGCT CGTCTCCTGA GGCCCACCAT CCAGTTCTTC   600
TTGGTGGCCT TTGCTGTGTA TGTTGGTTAC ACTCGTGTGT CTGATTATAA GCATCACTGG   660
AGCGATGTGA TGGTCGGGCT CCTCCAGGGG GCACTCATTG CAATTCTAAC CGTGCGATTT   720
GTATCAAATT TCTTTAAGGT CAGCCCTTCC CCTGAATGCT CAAATCAAGA GAATGCGGTA   780
AACGAAGAGC GAAAACCCAG TAACAGTTAC CGCTATTCTG GACCTGTGTG A            831