Sequences for DANRE16294

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
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HOGs	hog, sequence
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For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene DANRE16294 (MRPB_DANRE)

E Danio rerio | MARCKS-related protein 1-B [marcksl1b]

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Orthologs 193

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 48
Gene information
GO Annotations
Sequences/Isoforms 2
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	DANRE16295	207			2	MRPB_DANRE
	DANRE16294 reference isoform	207			2	MRPB_DANRE

Protein Sequence

Download: Fasta

MGSQASKGGV AVEGKAAAAD PAAVKTNGQE NGHVKTNGDV SAKAEGDAAT TNGSAEAAKE    60
SEAGAGDAIE PAPAAEGEAA KPEGEATKET PKKKKKKFSL KNSFKFKGIS LKKSKKNAEV   120
KEEAAAAAPA TEEKPEENGA ATEEKKEEEA KAEETPAAPV ETPKAEEPAA KAEEPAAAKE   180
EAAAPAVEAT KQTEETNSTP APSEQKE                                       207

cDNA Sequence

Download: Fasta

ATGGGATCCC AGGCATCAAA GGGAGGAGTG GCTGTGGAGG GGAAAGCCGC CGCTGCTGAC    60
CCGGCTGCCG TCAAGACTAA CGGACAGGAG AACGGTCATG TTAAGACCAA TGGTGATGTC   120
TCTGCCAAGG CAGAGGGAGA TGCTGCCACC ACCAACGGTT CTGCAGAAGC AGCTAAGGAA   180
TCTGAGGCTG GAGCCGGCGA CGCCATCGAA CCAGCGCCTG CCGCTGAGGG AGAGGCTGCC   240
AAACCTGAGG GCGAGGCCAC CAAGGAGACC CCCAAGAAGA AGAAGAAGAA GTTCTCCCTG   300
AAGAACTCCT TCAAATTCAA GGGTATCTCA CTGAAGAAGA GCAAGAAGAA TGCTGAGGTG   360
AAGGAAGAGG CCGCTGCTGC TGCTCCAGCT ACCGAAGAGA AGCCAGAGGA GAATGGAGCA   420
GCCACTGAGG AGAAGAAAGA GGAGGAGGCC AAGGCCGAGG AGACACCCGC TGCCCCTGTT   480
GAAACCCCCA AGGCCGAGGA GCCTGCAGCC AAGGCTGAGG AGCCTGCTGC TGCAAAGGAA   540
GAGGCTGCTG CACCTGCTGT AGAGGCCACG AAACAAACAG AGGAGACCAA CTCAACACCT   600
GCACCATCTG AACAGAAGGA GTGA                                          624