Sequences for CYNSE04716

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For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
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Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene CYNSE04716 (A0A3P8V1J5)

E Cynoglossus semilaevis | 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 [DNPH1]

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Orthologs 187

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 5
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	CYNSE04716 reference isoform	144			4	A0A3P8V1J5

Protein Sequence

Download: Fasta

MKVYFCGSIC GGRDDVLLYG RIVEKLKNFG TVLTEHVSSS ALSDKGEGAL AAGPKFIHDR    60
DVDWLRQSDV VVAEVTQPSL GVGYELGRVV DMKKKALCLF RPSSGRVLSA MIRGAQDGDL   120
FVVRDYAEDE LETLLDEFFA NLKL                                          144

cDNA Sequence

Download: Fasta

ATGAAAGTGT ATTTCTGCGG CAGCATCTGC GGTGGAAGAG ACGACGTTCT GCTTTACGGC    60
AGAATCGTGG AGAAGCTGAA GAACTTTGGG ACCGTTTTGA CAGAGCACGT GAGCAGCTCA   120
GCGCTCTCAG ACAAAGGTGA GGGTGCCCTT GCAGCAGGAC CGAAGTTCAT TCATGACCGA   180
GACGTGGACT GGTTGAGACA ATCAGATGTG GTGGTGGCAG AAGTCACACA GCCATCCCTT   240
GGTGTTGGTT ACGAACTAGG CCGAGTCGTC GACATGAAGA AAAAAGCTTT GTGTCTTTTC   300
AGGCCTTCGT CAGGAAGAGT TCTGTCAGCA ATGATCAGGG GAGCGCAGGA CGGGGACCTC   360
TTTGTGGTCA GAGACTACGC CGAAGACGAA TTGGAGACGC TCCTGGACGA GTTCTTTGCC   420
AACCTGAAAC TGTAG                                                    435