Sequences for CIOIN12068

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene CIOIN12068 (F6VZ53)

E Ciona intestinalis | Lysozyme g [LOC100176087]

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Orthologs 272

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 66
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	CIOIN12068 reference isoform	186			4	F6VZ53

Protein Sequence

Download: Fasta

YTGCYGNIYN TDTTGCSSQT SSQDNLGYSG ISASRQMAAT DLSRMNQYKS NIENAGRQLC    60
MDPSVIAGII SRETRAGATI GSDGYGADGH GYGLMQVDDR YHTIQGGPTS LDHILQGTGI   120
LISNIGQISS KFPSWDQNMD LKGGICAYNI GVGGVWSYDN MDVGTTGDDY SSDVVARAQY   180
YKDNGY                                                              186

cDNA Sequence

Download: Fasta

TATACCGGTT GCTATGGCAA CATCTACAAC ACTGACACCA CCGGTTGTTC CAGTCAAACA    60
TCAAGTCAAG ATAACTTGGG TTACAGCGGA ATCTCCGCTT CGAGGCAAAT GGCCGCAACA   120
GATCTGTCCA GAATGAACCA ATACAAAAGT AACATTGAGA ATGCTGGACG TCAACTGTGT   180
ATGGATCCTT CTGTCATTGC AGGCATCATT AGCAGGGAAA CTCGTGCGGG GGCTACCATT   240
GGTTCAGACG GTTACGGCGC AGATGGGCAC GGTTACGGTT TGATGCAGGT CGACGATCGT   300
TACCACACCA TACAAGGTGG CCCTACATCT CTTGACCATA TATTACAAGG CACTGGCATC   360
CTTATATCTA ATATTGGACA AATATCTTCG AAATTTCCAT CTTGGGACCA AAACATGGAC   420
TTAAAAGGCG GCATATGCGC TTATAATATA GGTGTTGGGG GCGTGTGGTC TTATGATAAC   480
ATGGACGTCG GTACAACTGG GGATGACTAC TCTAGCGATG TAGTGGCTAG AGCCCAGTAT   540
TATAAAGATA ACGGGTATTA G                                             561