Sequences for CHLSB10117

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene CHLSB10117 (A0A0D9R4P1)

E Chlorocebus sabaeus | Prolactin-inducible protein homolog [PIP]

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Orthologs 62

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 12
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	CHLSB10117 reference isoform	146			4	A0A0D9R4P1

Protein Sequence

Download: Fasta

MRLLQFLFRA SPATLLLVLC LHLGANKAQE NTRRIIIQNF EIPTTANRDE EVTATLQVKT    60
ELKECMVVKA YLTSDVPVEG AFNYRYTRCL CDDYPNTYYW DFHTNRTVKI AAVVDIIREL   120
GICPNDDAVT PISKNRFYTI KTLVVA                                        146

cDNA Sequence

Download: Fasta

ATGCGCTTGC TCCAGTTCCT GTTCAGGGCC AGCCCTGCCA CCCTGCTCCT GGTTCTCTGC    60
CTGCATTTGG GGGCCAACAA AGCTCAGGAA AACACTCGGA GGATCATAAT ACAGAATTTT   120
GAGATCCCCA CGACAGCAAA TCGAGATGAG GAAGTCACTG CAACGCTTCA AGTTAAAACA   180
GAATTGAAAG AATGCATGGT GGTTAAAGCT TACCTCACTA GTGACGTCCC TGTGGAAGGT   240
GCATTTAACT ACAGGTATAC TCGCTGCCTA TGTGACGATT ATCCAAATAC CTACTACTGG   300
GACTTTCATA CAAACAGAAC TGTGAAAATT GCAGCCGTCG TTGATATTAT TCGGGAATTA   360
GGCATCTGCC CTAATGATGA TGCTGTAACC CCCATCAGTA AAAACCGGTT TTATACTATT   420
AAAACCCTAG TGGTAGCGTA A                                             441