Sequences for CAVPO13999

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene CAVPO13999 (H0V4J3)

E Cavia porcellus | Lysozyme like 6 [LYZL6]

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Orthologs 206

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 1
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	CAVPO13999 reference isoform	148			4	H0V4J3

Protein Sequence

Download: Fasta

MARALLISLA SCLLVVNQAF IVRRCDLAKV LHEEQLDGFE GYSLSDWLCL AFVESNFNIS    60
KVNENADGSF DYGIFQINSH YWCNDYQSHS ENYCHVDCQD LLNPNLLSSI SCAKIIVSAS   120
GGMRNWVRWK LHCADRPHTY WMTGCHLG                                      148

cDNA Sequence

Download: Fasta

ATGGCCAGGG CGCTGCTCAT TTCCTTGGCC AGCTGCCTGC TTGTCGTAAA CCAAGCCTTC    60
ATTGTTAGAC GCTGCGACTT GGCCAAGGTT CTGCACGAGG AGCAGCTGGA TGGGTTTGAG   120
GGGTACTCCC TGAGTGACTG GTTGTGCCTG GCTTTTGTGG AAAGCAACTT CAACATATCA   180
AAGGTAAATG AAAATGCAGA TGGCAGCTTT GACTACGGAA TCTTCCAGAT CAACAGTCAC   240
TACTGGTGCA ATGATTACCA GAGTCACTCG GAAAACTATT GCCACGTGGA CTGCCAAGAT   300
TTACTGAACC CCAATCTTCT CTCATCCATC AGCTGTGCAA AGATCATTGT GTCTGCATCA   360
GGGGGGATGA GGAACTGGGT GAGATGGAAG CTGCACTGTG CAGACCGGCC ACACACCTAC   420
TGGATGACAG GGTGTCATCT GGGATGA                                       447