Sequences for CAVPO04196

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene CAVPO04196 (H0VBY4)

E Cavia porcellus | Interleukin-2 [IL2]

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Orthologs 72

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	CAVPO04196 reference isoform	152			4	H0VBY4

Protein Sequence

Download: Fasta

MYKTLLLSCL ALTLALLTSS APTSSSPKQT QDRLELLLRD LQTLLEGVTS NPRLPKMLKL    60
KLYPPKMVSE LQHLQCLEEE LRAVEQVLNL AEHKNFPLIH TKDFISNINV TVLSLKGSET   120
AFVCDLEDES VNIVEFLKRW IAFCQKIMSR LT                                 152

cDNA Sequence

Download: Fasta

ATGTACAAGA CGCTACTCTT GTCTTGCCTT GCACTAACCC TTGCACTTCT CACGAGCAGT    60
GCACCTACTT CAAGCTCTCC AAAGCAAACA CAGGACCGAC TGGAGCTATT ACTGAGGGAT   120
TTACAGACAC TCTTGGAAGG CGTTACTAGC AACCCCAGAC TCCCTAAGAT GCTAAAATTA   180
AAACTCTACC CACCCAAGAT GGTCTCAGAA CTGCAACATC TTCAGTGTCT AGAGGAAGAA   240
CTGAGGGCCG TGGAGCAGGT GCTAAATTTA GCTGAACACA AAAACTTTCC CTTGATACAC   300
ACCAAGGATT TCATCAGTAA TATCAATGTA ACAGTTCTGA GCCTAAAGGG ATCCGAAACA   360
GCATTTGTGT GTGACTTAGA AGATGAATCA GTAAACATTG TGGAATTTCT GAAGAGATGG   420
ATCGCTTTTT GTCAGAAAAT CATGTCAAGA CTGACTTGA                          459