Sequences for CAVPO02346

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene CAVPO02346 (A0A286X9A0)

E Cavia porcellus | Starch binding domain 1 [STBD1]

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Orthologs 68

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	CAVPO02346 reference isoform	282			5	A0A286X9A0

Protein Sequence

Download: Fasta

MGAVWSALLV GGGLAGALLV WLLRGGPGDA GKDASPREAA DARGGPDAGG VGGKEPLCTP    60
PIHLQESNGH LISETKVNEA SENESLESHV GEKKFQKGQE TPAKAATCFA DKLPFNSPPV   120
DRLDTQDPAG QEDWEMVSRH SSWGDVGLGG NLEVSGVNLS PEMHDNRSSL VAARDWEVDG   180
KRKSSKQVSV RFQVHYLTST DVQFIAVTGD HERLGRWDTY IPLLHHKDGL WSHSVLLPAD   240
TVVEWKFVLV ENGGVARWEE CSNRRLVTGH EDKVVHGWWG MH                      282

cDNA Sequence

Download: Fasta

ATGGGCGCCG TCTGGTCCGC CCTGCTGGTC GGCGGGGGGC TGGCGGGGGC GCTGCTCGTG    60
TGGCTGCTGC GGGGCGGCCC CGGCGACGCG GGCAAGGACG CCTCTCCCCG GGAGGCCGCG   120
GACGCTAGAG GGGGTCCTGA TGCAGGAGGG GTTGGTGGCA AGGAGCCTCT GTGTACCCCA   180
CCTATTCATC TTCAAGAAAG CAATGGACAT TTGATTTCTG AGACCAAAGT GAATGAAGCT   240
TCAGAAAATG AAAGCCTTGA GTCTCATGTG GGAGAAAAGA AATTCCAAAA AGGACAAGAG   300
ACCCCTGCTA AAGCAGCCAC ATGTTTTGCA GATAAGCTGC CATTTAATAG CCCACCCGTG   360
GACAGACTGG ATACTCAGGA CCCAGCTGGC CAGGAGGACT GGGAAATGGT GTCTAGGCAC   420
TCATCTTGGG GAGATGTGGG TTTGGGTGGC AACCTGGAGG TTTCTGGGGT AAACCTAAGC   480
CCGGAAATGC ATGACAACAG GAGCAGCCTT GTGGCAGCAA GAGACTGGGA AGTGGACGGG   540
AAAAGAAAAA GTTCTAAGCA AGTTAGCGTC AGGTTCCAGG TTCACTACCT CACGAGCACA   600
GACGTGCAGT TCATTGCAGT AACTGGAGAC CACGAGCGTC TTGGCAGGTG GGACACTTAC   660
ATCCCACTCC TCCATCACAA GGACGGGCTG TGGTCTCATT CTGTCTTGCT GCCGGCAGAT   720
ACGGTGGTGG AGTGGAAGTT TGTGCTGGTG GAGAATGGGG GAGTTGCCCG CTGGGAAGAA   780
TGCAGCAATA GACGCCTGGT GACCGGCCAC GAGGACAAGG TGGTTCACGG GTGGTGGGGG   840
ATGCACTGA                                                           849