Sequences for CAPHI29370

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
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HOGs	hog, sequence
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Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene CAPHI29370 (A0A452G876)

E Capra hircus | Charged multivesicular body protein 5 [CHMP5]

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Orthologs 831

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 145
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	CAPHI29370 reference isoform	219			8	A0A452G876

Protein Sequence

Download: Fasta

MNRFFGKAKP KAPPPSLTDC IGTVDSRAES IDKKISRLDA ELVKYKDQIK KMREGPAKNM    60
VKQKALRVLK QKRMYEQQRD NLAQQSFNME QANYTIQSLK DTKTTVDAMK LGVKEMKKAY   120
KQVKIDQIED LQDQLEDMME DANEIQEALS RSYGTPELDE DDLEAELDAL GDELLADEDS   180
SYLDEAAAAP AIPEGVPTDT KNKDGVLVDE FGLPQIPAS                          219

cDNA Sequence

Download: Fasta

ATGAACCGAT TCTTCGGGAA AGCGAAACCC AAGGCTCCGC CGCCCAGCTT GACTGACTGC    60
ATTGGCACGG TGGACAGCAG AGCAGAATCC ATTGACAAGA AGATTTCTCG GCTGGATGCT   120
GAACTAGTGA AGTATAAGGA TCAGATCAAG AAGATGAGGG AGGGACCTGC AAAGAATATG   180
GTCAAGCAGA AAGCCTTGCG GGTTTTAAAG CAAAAGCGGA TGTACGAGCA ACAGCGGGAC   240
AATCTCGCCC AACAGTCATT TAATATGGAG CAAGCCAACT ACACCATCCA GTCATTGAAG   300
GACACCAAGA CCACGGTTGA TGCTATGAAA TTGGGAGTAA AGGAAATGAA GAAAGCATAC   360
AAGCAAGTGA AAATTGACCA GATTGAGGAT CTACAAGACC AGCTAGAGGA TATGATGGAA   420
GATGCAAATG AAATCCAAGA AGCACTGAGT CGTAGTTACG GCACCCCAGA ATTAGATGAA   480
GATGACCTCG AAGCAGAGTT GGATGCACTG GGTGATGAGC TTCTGGCTGA TGAAGACAGT   540
TCTTATTTGG ATGAAGCAGC AGCTGCGCCC GCAATTCCAG AAGGTGTTCC CACTGACACG   600
AAGAACAAGG ATGGAGTCCT GGTGGATGAA TTTGGATTGC CACAGATCCC TGCTTCGTAG   660