Sequences for CAPHI15272

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene CAPHI15272 (A0A452F9F9)

E Capra hircus | Glutathione peroxidase [GPX6]

‹

Orthologs 187

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 139
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	CAPHI15272 reference isoform	223			6	A0A452F9F9

Protein Sequence

Download: Fasta

MILQLWASCL FPLFLVSLAQ LTPKQQQMKV DCYKGVTGTI YEYGALTLNG EEYIQFKQYA    60
GKHVLFVNVY PGKNSCFNSL GTKLNALQEE LKPFGVVVLG FPCNQFGKQE PAKNSEILMG   120
LKYVRPGGGF VPNFQLFEKG DVNGEKEQKV FTFLKNSCPP TSDLLGSSSQ LFWEPMKVHD   180
IRWNFEKFLV GPDGVPVMRW YHRASVSTVK SDMLEYLKQF KSE                     223

cDNA Sequence

Download: Fasta

ATGATCCTGC AGCTCTGGGC CTCCTGTCTT TTCCCACTGT TCCTGGTCAG CTTAGCTCAG    60
CTGACTCCGA AGCAGCAACA GATGAAGGTG GATTGCTATA AGGGGGTGAC AGGCACCATC   120
TATGAGTATG GAGCCCTCAC CCTCAATGGT GAGGAGTATA TCCAGTTCAA GCAGTACGCG   180
GGCAAGCATG TCCTGTTTGT CAATGTGTAT CCAGGTAAGA ACTCATGTTT CAACTCTCTT   240
GGAACTAAAC TGAATGCACT ACAGGAGGAG CTGAAGCCTT TCGGTGTAGT TGTGTTGGGC   300
TTTCCCTGCA ACCAATTTGG AAAACAAGAG CCAGCAAAGA ACTCGGAGAT CCTTATGGGG   360
CTCAAGTATG TACGTCCAGG TGGTGGCTTT GTTCCCAATT TTCAGCTCTT TGAGAAAGGG   420
GATGTGAATG GAGAAAAAGA ACAGAAGGTC TTTACCTTCC TGAAGAACTC CTGCCCTCCA   480
ACCTCTGATC TTTTGGGCTC ATCAAGTCAG CTCTTCTGGG AGCCCATGAA GGTCCATGAC   540
ATTCGCTGGA ACTTTGAGAA GTTTCTAGTG GGGCCTGATG GTGTCCCTGT CATGCGTTGG   600
TACCACCGGG CTTCAGTCAG CACAGTTAAA TCAGACATGC TGGAGTACCT GAAGCAGTTC   660
AAAAGCGAAT AG                                                       672