Sequences for CAPHI11073

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
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HOGs	hog, sequence
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Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene CAPHI11073 (A0A452E4F6)

E Capra hircus | Lysozyme like 6 [LYZL6]

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Orthologs 241

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 3
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	CAPHI11073 reference isoform	148			4	A0A452E4F6

Protein Sequence

Download: Fasta

MTSPLLISLV SCLVAVDQAS LIGRCDLAKV LHQEDLDGFE GYSLTDWLCL AFVESDFNIT    60
KVNENTDGSF DYGIFQINSH YWCNDYQSHT ENNCQVDCQE LLSPNLLAII NCAKKIVSGA   120
GGMKNWVKWR LHCAGRPLSY WMTGCHLA                                      148

cDNA Sequence

Download: Fasta

ATGACAAGCC CACTGCTCAT CTCCTTGGTC AGCTGCCTCG TTGCTGTGGA TCAAGCCAGC    60
CTCATCGGCC GCTGTGACTT GGCCAAGGTG CTGCACCAGG AGGACTTGGA TGGGTTTGAG   120
GGCTACTCCC TGACTGACTG GCTGTGCCTG GCTTTCGTAG AGAGTGATTT CAACATAACA   180
AAGGTAAATG AAAACACAGA TGGCAGCTTT GACTATGGCA TCTTCCAGAT CAACAGCCAC   240
TACTGGTGCA ACGATTACCA GAGTCACACG GAAAACAACT GCCAAGTGGA CTGTCAAGAA   300
CTGCTGAGCC CCAATCTTCT CGCAATTATC AACTGTGCAA AAAAGATTGT GTCCGGAGCG   360
GGGGGGATGA AGAACTGGGT AAAGTGGAGG TTGCACTGTG CCGGCCGGCC CCTCTCCTAC   420
TGGATGACAG GCTGTCACCT GGCATGA                                       447