Sequences for CAPHI06399

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
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HOGs	hog, sequence
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Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene CAPHI06399 (A0A452EL68)

E Capra hircus | G-protein coupled receptors family 1 profile domai [LOC102186707]

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Orthologs 97

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 10
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	CAPHI06399 reference isoform	260			3	A0A452EL68

Protein Sequence

Download: Fasta

MEFILLGFSD IPNFQRILWG IFFIFYLTIV MCNSVIVLIT RIDPTLQTTM YFFLNHFSIL    60
EICYVTVTIP RMLTDLLNQK GHVSFIACAA QMCLVLLFGG LECLLLAVMA YDRYVAICNP   120
LRYGLIMSPQ VCVQLVTASW VSGVPVVIGQ TWQVSSLLFC GSSAINHFFC DLPPVFKLAC   180
GDTFVNEIAV YVVAVVFIMV PFLLIGVSCG NIISNILKLP NQINLKKLGI WIPTLNPIIF   240
TLRNKDTTVA LRKLLSKLST                                               260

cDNA Sequence

Download: Fasta

ATGGAATTTA TCCTCTTGGG GTTTTCTGAT ATTCCCAATT TCCAACGGAT TCTTTGGGGG    60
ATATTTTTCA TCTTCTATCT GACCATCGTG ATGTGCAATA GTGTCATTGT ACTGATAACA   120
AGAATTGACC CTACTCTCCA GACCACCATG TACTTTTTCC TCAACCACTT TTCCATTTTA   180
GAAATCTGTT ACGTAACTGT CACTATCCCA AGAATGCTCA CGGACCTTCT GAACCAGAAA   240
GGGCACGTTT CTTTCATTGC CTGTGCTGCA CAAATGTGTT TGGTCCTTCT GTTTGGAGGT   300
TTAGAGTGTC TCCTCCTGGC CGTGATGGCC TACGACCGCT ACGTGGCCAT TTGTAACCCT   360
CTTCGCTATG GTCTGATCAT GAGCCCCCAG GTCTGTGTCC AGCTGGTCAC TGCCTCCTGG   420
GTCAGTGGAG TTCCTGTTGT AATTGGGCAA ACATGGCAGG TTTCCTCTCT GCTCTTTTGT   480
GGGTCTAGTG CAATTAATCA TTTTTTCTGT GACCTTCCCC CAGTATTCAA GCTTGCTTGT   540
GGGGACACAT TTGTGAATGA GATAGCAGTC TATGTAGTTG CAGTCGTGTT CATCATGGTT   600
CCATTTCTGT TGATTGGTGT CTCCTGTGGC AACATCATCT CCAACATTCT GAAACTCCCA   660
AACCAAATCA ATCTGAAGAA ACTGGGAATT TGGATCCCAA CGTTGAATCC CATTATATTT   720
ACTCTGAGGA ACAAAGATAC CACCGTAGCA CTGAGAAAAC TACTAAGTAA ATTATCAACT   780
TGA                                                                 783