Sequences for CALMI26561

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene CALMI26561 (V9LCG6)

E Callorhinchus milii | Prostaglandin E synthase [ptges]

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Orthologs 187

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 413
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	CALMI26561 reference isoform	145			3	V9LCG6

Protein Sequence

Download: Fasta

MNNEVFACFT FYSTLLVVKM YIVAIITGQL RLRRKAFTNP EDALRHGGKQ YYRDDPDVER    60
SRRAHRNDME NIFPFLFLGA VYSLMEPNLF VARIHFLVFF VGRLVHTVAY LLPLKAPTRS   120
IAYSIAQIPC GSIALQILFN VATNW                                         145

cDNA Sequence

Download: Fasta

ATGAACAACG AGGTTTTCGC GTGTTTTACC TTTTACAGCA CCCTTTTGGT GGTGAAAATG    60
TACATCGTGG CTATCATCAC AGGGCAGCTG AGACTCCGCA GAAAGGCTTT CACTAACCCA   120
GAAGATGCTC TGAGACACGG TGGGAAGCAG TATTATCGGG ACGACCCTGA TGTGGAGCGA   180
AGCCGCAGAG CCCACCGCAA CGATATGGAG AACATCTTTC CCTTCCTCTT CCTTGGTGCT   240
GTCTACTCGC TGATGGAACC CAATCTGTTT GTTGCACGGA TTCACTTCCT GGTTTTCTTC   300
GTGGGCCGGC TGGTGCACAC TGTCGCCTAC CTTTTACCTC TTAAAGCGCC AACACGATCA   360
ATAGCTTACA GCATTGCACA GATCCCTTGT GGGTCCATTG CCCTTCAGAT TTTGTTCAAT   420
GTAGCAACCA ACTGGTAA                                                 438