Sequences for CALJA33860

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene CALJA33860 (F7EJI3)

E Callithrix jacchus | Dolichol-phosphate mannosyltransferase subunit 1 [DPM1]

‹

Orthologs 1733

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 72
Gene information
GO Annotations
Sequences/Isoforms 2
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	CALJA33861	260			9	F6RQC7
	CALJA33860 reference isoform	287			11	F7EJI3

Protein Sequence

Download: Fasta

MASLEVSGSP PRSRRELEVR STLQDKYSVL LPTYNERENL PLIVWLLVKS FSESGINYEI    60
IIIDDGSPDG TRDVAEQLEK IYGSDRILLR PREKKLGLGT AYIHGMKHAT GNYIIIMDAD   120
LSHHPKFIPE FIRKQKEGNF DIVSGTRYKG NGGVYGWDLK RKIISDGVLP CCPGWSLLGS   180
NDPPISASWD CSRGANFLTQ ILLRPGASDL TGSFRLYRKE VLEKLIEKCV SKGYVFQMEM   240
IVRARQLNYT IGEVPISFVD RVYGESKLGG NEIVSFLRGL LTLFATT                 287

cDNA Sequence

Download: Fasta

ATGGCCTCCT TGGAAGTGAG TGGTAGTCCT CCCAGGTCTC GGCGGGAGCT GGAGGTGCGC    60
AGTACACTAC AGGACAAATA TTCGGTGCTT TTACCCACCT ACAACGAGCG CGAGAACCTG   120
CCACTTATCG TGTGGTTGCT GGTGAAATCC TTCTCCGAGA GTGGAATCAA CTATGAAATT   180
ATAATCATAG ATGATGGAAG CCCAGATGGA ACAAGGGATG TTGCTGAACA GTTGGAGAAG   240
ATCTATGGGT CAGACAGAAT TCTTCTAAGA CCAAGAGAGA AAAAGTTGGG ACTAGGAACT   300
GCATATATTC ATGGAATGAA ACACGCCACA GGAAACTACA TAATTATTAT GGATGCTGAT   360
CTCTCACACC ATCCAAAATT TATTCCTGAA TTCATTAGGA AGCAAAAGGA GGGTAATTTT   420
GATATTGTCT CTGGAACTCG CTACAAAGGA AATGGAGGTG TATATGGCTG GGATTTGAAA   480
AGAAAAATAA TCAGTGATGG AGTTTTGCCA TGTTGCCCAG GCTGGTCACT CCTGGGCTCA   540
AACGATCCAC CCATCTCAGC CTCCTGGGAT TGCAGCCGTG GGGCCAATTT TTTAACTCAG   600
ATTTTGCTGA GACCAGGAGC ATCTGATTTA ACAGGAAGTT TCAGATTATA CCGCAAAGAA   660
GTTCTAGAGA AATTAATAGA AAAATGTGTT TCTAAAGGCT ATGTCTTCCA GATGGAGATG   720
ATTGTTCGGG CAAGACAGTT GAATTACACT ATTGGCGAGG TTCCAATATC ATTTGTGGAT   780
CGTGTTTATG GTGAATCCAA GTTGGGAGGA AATGAAATAG TATCTTTCTT GAGAGGATTA   840
TTGACTCTTT TTGCTACTAC ATAA                                          864