Sequences for CAEEL16800

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene CAEEL16800 (O45836)

E Caenorhabditis elegans | ShKT domain-containing protein

‹

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	CAEEL16800 reference isoform	125			2	O45836

Protein Sequence

Download: Fasta

MLFLAIFCSN FILQFSAEIL GDFSCTIPAF NGSVYSQTAV NCNNSYSDIA CQQLYPPAYA    60
YSISSKYPKA GGTGGRPLGC YSSSGRPTGP IDEIMKLKAS ISCPKTCGYC CLVSPKLFEN   120
KFRMR                                                               125

cDNA Sequence

Download: Fasta

ATGTTGTTCC TAGCTATATT CTGCTCAAAC TTTATTCTTC AATTTTCTGC GGAAATATTG    60
GGTGACTTTA GTTGCACCAT ACCAGCGTTT AATGGGAGCG TCTACTCACA AACTGCAGTG   120
AATTGCAACA ATTCCTACTC GGATATCGCA TGCCAACAAC TATACCCTCC AGCCTACGCA   180
TACTCAATTT CGAGTAAATA CCCAAAAGCC GGCGGAACAG GAGGACGCCC CTTAGGATGT   240
TACAGTAGTT CTGGAAGGCC AACTGGACCA ATTGATGAGA TTATGAAACT TAAAGCTAGC   300
ATAAGCTGCC CAAAGACTTG TGGATATTGC TGCCTGGTTT CGCCAAAACT TTTTGAAAAT   360
AAATTTCGAA TGCGATAA                                                 378