Sequences for BRAP900096

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene BRAP900096 (WP_013243060)

B Brachyspira pilosicoli (strain ATCC BAA-1826 / 95/1000)

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Orthologs 708

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 1566
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	BRAP900096 reference isoform	253			1	WP_013243060

Protein Sequence

Download: Fasta

MNIYIADSYK DYTSFTANHI LRFLEKKQKT KEKLYISVSS ENDTKDIYKA IIENIKNYNI    60
NFKNIFIFQQ SEYVGLSQDD KNSKAYFLKE NLLSKLNIPK KNQFLFDGSK DESQMEKQLE   120
IIKKIGRFDV IWYSLTPDST SAGNERMSSL SSLFRLKTLS EHSIKAIENK FKNEVPTMVF   180
SMGMGIIDIV DTILLTSSGI ENSCSLRDCL ECGISNSSPL SKLQKHSDVT VIADYESSLR   240
LSSQTVSMKI KQN                                                      253

cDNA Sequence

Download: Fasta

ATGAATATAT ATATAGCAGA TTCTTATAAA GATTATACAT CTTTTACAGC AAACCATATT    60
TTACGCTTTT TAGAGAAGAA ACAAAAAACA AAAGAAAAAC TTTATATTTC TGTTTCAAGC   120
GAAAATGATA CTAAAGATAT ATATAAAGCA ATAATAGAAA ATATAAAAAA TTATAATATT   180
AATTTTAAAA ATATATTTAT ATTTCAGCAA TCAGAATATG TTGGTTTGTC TCAAGATGAT   240
AAAAACAGTA AAGCATATTT TTTGAAAGAG AATTTGCTTT CAAAATTAAA TATTCCAAAA   300
AAGAATCAAT TTTTATTTGA CGGAAGTAAA GATGAAAGTC AAATGGAAAA ACAATTAGAA   360
ATAATAAAAA AGATAGGCAG ATTTGATGTT ATATGGTACT CTCTAACCCC TGATTCAACT   420
TCTGCAGGTA ATGAAAGAAT GTCATCATTA TCATCATTAT TTAGATTAAA AACATTAAGC   480
GAACATTCTA TAAAAGCAAT AGAAAATAAA TTTAAAAACG AAGTACCTAC TATGGTATTT   540
AGTATGGGAA TGGGTATTAT AGATATAGTT GATACTATTT TGCTTACATC ATCTGGCATA   600
GAAAATTCTT GCTCTCTTAG AGATTGTTTG GAATGCGGTA TAAGCAATTC TTCACCATTG   660
AGTAAACTTC AAAAGCATAG TGATGTTACT GTAATAGCAG ATTATGAATC ATCTTTAAGA   720
TTATCGAGCC AAACTGTATC TATGAAAATA AAACAAAATT AA                      762