Sequences for BOVIN24679

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene BOVIN24679 (A5D7P1)

E Bos taurus | Ribulose-phosphate 3-epimerase [RPE]

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Orthologs 3170

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 281
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	BOVIN24679 reference isoform	228			6	A5D7P1

Protein Sequence

Download: Fasta

MASGCKIGPS ILNSDLASLG AECLRMLDSG ADYLHLDVMD GHFVPNITFG HPVVESLRKQ    60
LGQDPFFDMH MMVSRPEQWV KPMAVAGANQ YTFHLEATDN PGALIKDIRE NGMKVGLAIK   120
PGTSVEYLAP WANQIDMALV MTVEPGFGGQ KFMEDMMPKV HWLRTQFPSL DIEVDGGVGP   180
DTIHKCAEAG ANMIVSGSAI MRSEDPRSVI NLLRNVCSEA AQKRSLDR                228

cDNA Sequence

Download: Fasta

ATGGCGTCTG GTTGCAAGAT TGGCCCTTCC ATCCTCAACA GTGACCTGGC CAGTTTAGGG    60
GCCGAGTGCC TCCGGATGCT GGACTCTGGG GCCGATTATC TGCACCTGGA TGTAATGGAC   120
GGGCATTTTG TTCCCAACAT CACCTTTGGT CACCCTGTGG TAGAAAGCCT CCGAAAGCAG   180
CTAGGCCAGG ACCCTTTCTT TGACATGCAC ATGATGGTGT CCAGGCCAGA ACAGTGGGTA   240
AAGCCAATGG CTGTAGCAGG AGCCAATCAA TATACCTTTC ATCTTGAGGC TACTGACAAC   300
CCAGGAGCTT TGATCAAAGA CATTCGGGAG AATGGAATGA AGGTTGGCCT TGCTATCAAA   360
CCAGGAACTT CAGTTGAATA TTTGGCACCA TGGGCTAATC AAATAGATAT GGCCTTGGTT   420
ATGACAGTGG AACCTGGGTT TGGAGGGCAG AAATTCATGG AAGATATGAT GCCAAAGGTT   480
CATTGGTTGA GGACCCAGTT CCCATCTTTG GACATTGAGG TGGATGGTGG AGTAGGTCCT   540
GACACTATCC ATAAATGCGC AGAGGCAGGC GCTAACATGA TTGTGTCTGG CAGTGCCATT   600
ATGAGGAGTG AAGACCCCAG ATCTGTGATC AACCTGTTAA GAAATGTTTG CTCAGAAGCT   660
GCTCAGAAAC GTTCTCTTGA TCGATGA                                       687