Sequences for BOVIN10181

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene BOVIN10181 (CLC3A_BOVIN)

E Bos taurus | C-type lectin domain family 3 member A [CLEC3A]

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Orthologs 202

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	BOVIN10181 reference isoform	197			3	CLC3A_BOVIN

Protein Sequence

Download: Fasta

MAKNGLVIYI LVITLLLDQT SCHASKFKAR KHSKRRVKEK DGDLKTQVEK LWREVNALKE    60
MQALQTVCLR GTKFHKKCYL AAEGLKHFHE ANEDCISKGG TLVVPRSADE INALRDYGKR   120
SLPGVNDFWL GINDMVAEGK FVDINGLAIS FLNWDQAQPN GGKRENCALF SQSAQGKWSD   180
EACHSSKRYI CEFTIPQ                                                  197

cDNA Sequence

Download: Fasta

ATGGCGAAGA ACGGACTTGT AATTTACATC CTGGTTATCA CCTTGCTCCT GGATCAGACC    60
AGCTGCCACG CATCCAAGTT CAAAGCCAGG AAGCACAGCA AACGCCGAGT GAAAGAGAAG   120
GATGGAGACC TGAAGACTCA AGTGGAAAAG CTCTGGAGAG AAGTCAATGC CCTGAAGGAA   180
ATGCAAGCCC TGCAGACAGT CTGTCTCCGA GGCACAAAAT TTCACAAGAA GTGCTACCTT   240
GCCGCAGAAG GCTTGAAGCA CTTCCACGAA GCCAATGAAG ACTGTATTTC CAAGGGCGGG   300
ACCCTGGTTG TCCCCAGAAG CGCGGATGAA ATCAACGCCC TCCGAGACTA TGGTAAAAGG   360
AGCCTGCCGG GGGTCAATGA CTTTTGGCTG GGCATCAATG ACATGGTCGC AGAAGGCAAG   420
TTTGTCGACA TCAATGGGCT TGCCATCTCC TTCCTCAACT GGGACCAGGC ACAGCCTAAC   480
GGTGGCAAGC GGGAAAATTG TGCCCTCTTC TCCCAGTCAG CTCAGGGCAA GTGGAGTGAC   540
GAGGCCTGTC ACAGCAGCAA GAGGTACATA TGTGAGTTCA CCATCCCTCA ATAG         594