Sequences for BOBOX06194

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene BOBOX06194 (A0A4W2C7K5)

E Bos indicus x Bos taurus | 11-beta-hydroxysteroid dehydrogenase 1 [HSD11B1]

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Orthologs 547

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 516
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	BOBOX06194 reference isoform	292			6	A0A4W2C7K5

Protein Sequence

Download: Fasta

MAFMKKYLLP ILGIFLAYYY YSANEEFRPE MLRGKRVIVT GASKGIGREM AYHLARMGAH    60
VVVTARSEES LKKVVSRCLE LGAASAHYVA GTMENMTFAE QFVAKAGELV GGLDMLILNH   120
IHYTPLGVFS NDIHLLRRTL EVNLLSYVVL STAALPMLKQ TNGSIVVVSS IAGKIACPLV   180
AAYSASKFAL DGFFSSLRME YEATKVNVSI TLCILGLIDT DTAMKAVAGI FNAKASPKEE   240
CALEIIKGGT LRQDEVYYDS SILTPLLLRN PGRKIMEFFF LKKYNMERFI NN           292

cDNA Sequence

Download: Fasta

ATGGCTTTTA TGAAAAAATA CCTCCTCCCC ATCCTGGGGA TCTTCTTGGC CTACTACTAC    60
TATTCTGCGA ATGAGGAATT CAGACCAGAG ATGCTTCGAG GAAAGAGAGT GATTGTCACG   120
GGGGCCAGCA AGGGAATCGG AAGAGAAATG GCCTATCACC TGGCAAGGAT GGGAGCACAT   180
GTGGTAGTGA CAGCGAGGTC AGAAGAAAGT CTAAAGAAGG TGGTATCCCG CTGCCTGGAG   240
CTGGGGGCGG CCTCAGCACA CTACGTGGCG GGCACCATGG AGAACATGAC CTTCGCAGAA   300
CAATTTGTTG CCAAAGCTGG AGAGCTCGTG GGGGGACTTG ACATGCTCAT TCTCAACCAC   360
ATCCACTACA CGCCTTTGGG GGTGTTTAGC AATGACATCC ATCTCTTGCG CAGAACCCTG   420
GAGGTCAACC TTCTGAGTTA TGTGGTCCTG AGCACAGCCG CCTTGCCCAT GCTGAAGCAG   480
ACCAACGGGA GCATTGTGGT CGTCTCCTCC ATAGCCGGGA AAATAGCTTG TCCACTTGTT   540
GCTGCGTATT CTGCAAGCAA GTTTGCTCTG GATGGGTTCT TCTCCTCTCT CAGGATGGAA   600
TATGAGGCGA CCAAGGTCAA TGTGTCAATC ACCCTCTGTA TTCTTGGCCT CATCGACACA   660
GACACAGCCA TGAAGGCAGT TGCTGGGATA TTTAATGCAA AAGCATCTCC AAAGGAAGAA   720
TGTGCCCTGG AGATTATCAA AGGGGGAACT CTGCGCCAAG ATGAAGTATA TTATGACAGT   780
TCAATCTTGA CTCCTCTCCT GCTGAGAAAT CCAGGAAGGA AGATCATGGA ATTTTTCTTC   840
TTGAAGAAAT ATAATATGGA AAGATTTATA AACAACTAG                          879