Sequences for ASTMX03785

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

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HOGs	hog, sequence
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For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ASTMX03785 (A0A3B1J3D5)

E Astyanax mexicanus | 3-ketoacyl-[acyl-carrier-protein] reductase beta s [cbr4]

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Orthologs 14741

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 785
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	ASTMX03785 reference isoform	237			5	A0A3B1J3D5

Protein Sequence

Download: Fasta

MSKLGVVFGG SRGIGCAVAQ LLAQRGHRVV VVSRNLEAAQ TKANSLPGGD HVGISCDVSN    60
EQDVQRAFET ITKTCGPVGY LVNSAGINRD ALLMRSKSED MVSVLHTNLL GSMFTCRAAL   120
RSMLSKGGAI VNIGSVVGVK GNAGQCVYSA SKAGLEGFTR SLARELASRN ITVNLVAPGL   180
IRTDMTAGLK EDVEGRRIPL GRFGKPEEVA QAVLFLLETP YVTGQVLLVD GGLQLVM      237

cDNA Sequence

Download: Fasta

ATGTCCAAAC TGGGTGTGGT GTTTGGGGGT TCCCGTGGCA TTGGGTGTGC AGTTGCACAG    60
CTGTTGGCAC AAAGGGGGCA CAGAGTTGTG GTGGTGTCCA GAAACCTGGA AGCAGCACAA   120
ACTAAAGCAA ACTCACTTCC TGGAGGAGAT CATGTTGGCA TCAGCTGTGA TGTTTCTAAT   180
GAACAAGATG TCCAGAGAGC GTTTGAGACC ATTACTAAGA CATGTGGGCC TGTGGGATAC   240
CTGGTTAACT CAGCTGGCAT CAATAGAGAT GCACTGTTAA TGAGGAGTAA ATCTGAGGAC   300
ATGGTCTCTG TTCTTCACAC CAACCTGCTT GGCTCTATGT TTACCTGTAG AGCAGCTCTT   360
CGGAGCATGC TAAGTAAAGG AGGTGCTATT GTCAACATAG GATCAGTGGT GGGTGTAAAG   420
GGAAACGCTG GTCAGTGTGT GTACAGCGCC AGTAAAGCCG GCCTGGAGGG ATTCACACGC   480
TCCCTCGCCA GAGAGCTCGC CTCCAGAAAC ATCACAGTCA ACTTAGTGGC TCCAGGGCTC   540
ATCCGCACAG ACATGACGGC GGGTCTGAAG GAGGACGTGG AGGGGAGGAG GATTCCATTG   600
GGTCGTTTCG GGAAGCCAGA GGAAGTAGCA CAGGCTGTTC TGTTCCTCCT GGAGACACCT   660
TATGTTACAG GACAGGTTCT GCTGGTGGAC GGAGGATTAC AGCTGGTCAT GTGA         714