Sequences for ARATH40554

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ARATH40554 (A8MS23)

E Arabidopsis thaliana | Sulfurtransferase 18 [STR18]

‹

Orthologs 188

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 39
Gene information
GO Annotations
Sequences/Isoforms 3
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	ARATH40553 reference isoform	136			5	STR18_ARATH
	ARATH40555	138			5	F4JZ39
	ARATH40554	136			5	A8MS23

Protein Sequence

Download: Fasta

MSQSISSSTK AEEVVSVDVS QAKTLLQSGH QYLDVRTQDE FRRGHCEAAK IVNIPYMLNT    60
PQGRVKNQEF LEQVSSLLNP ADDILVGCQS GARSLKATTE LVAAGYKKVR NVGGGYLAWV   120
DHSFPINTEE EEPSAN                                                   136

cDNA Sequence

Download: Fasta

ATGTCTCAAT CAATCTCCTC CAGCACAAAG GCAGAAGAAG TTGTTAGTGT AGATGTGAGC    60
CAAGCCAAGA CTCTCCTCCA GTCTGGGCAT CAATATCTTG ACGTTAGGAC TCAGGACGAG   120
TTTAGGAGAG GCCATTGTGA GGCAGCTAAG ATCGTCAACA TTCCCTACAT GCTCAACACA   180
CCTCAAGGTA GAGTGAAGAA TCAAGAGTTC TTGGAGCAAG TATCTTCTCT TCTAAACCCA   240
GCTGATGATA TCCTTGTGGG TTGTCAGAGT GGAGCCAGAT CCTTAAAAGC CACAACTGAA   300
CTTGTTGCTG CAGGTTACAA GAAAGTGAGA AACGTGGGAG GTGGCTACTT GGCTTGGGTG   360
GATCACAGCT TTCCCATCAA CACGGAGGAG GAGGAGCCAT CTGCTAATTA A            411