OMA: MSA of OMA Group

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

OMA GROUP 958743 with 60 members.

Fingerprint: CAEDILV | chloride intracellular channel protein

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Label

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CHIPU09527

CALMI01496

ANGAN13640

ECHNA29058

SPAAU64344

SALFA00617

OREAU17002

ORENI48023

ESOLU11328

SALSA140527

SALTR109963

ASTMX08824

ELEEL37320

CYPCA84700

DANRE49752

TACAU07840

RATNO21780

GORGO43853

HUMAN102997

PANTR47200

NOMLE39005

FELCA39368

SURSU23137

HORSE44453

CERSS33085

MONDO35768

VOMUR30376

HALLE09157

FALTI23853

CHICK20780

PHACC08447

CORMO03492

TAEGU22770

CHLGU09097

STRHB23566

ATHCN13398

TYTAL35596

LACAG38902

PODMU25387

SALMN23150

VARKO14865

SCEUN36357

PANGU24905

THAEL21523

NAJNA24258

CROTI04985

PROMU17174

PYTBI03755

HYPDU09019

PECMA32790

OCTBM26418

HALRU48487

PAPSO04588

CHEQI36295

HELAN08169

SOYBN03871

RICCO19933

POPTR00548

BRANA66538

GOSHI20924