OMA: MSA of OMA Group

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

OMA GROUP 939527 with 61 members.

Fingerprint: EKAMVNN | carbonic anhydrase

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Label

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ORNAN02213

TACAU13312

LOXAF06284

RABIT17599

DIPOR05143

FUKDA14697

HETGA11521

CAVPO25296

CHILA23083

OCTDE23895

JACJA17795

CRIGR00275

MOUSE58940

RATNO14524

NANGA12305

CERAT00781

MACFA25554

MACMU26355

MACNE41350

MANLE03866

PAPAN15650

COLAP23926

RHIBE01543

RHIRO02256

GORGO12330

HUMAN30173

PANTR13044

PONAB10471

CEBIM16306

SAIBB05224

CARSF16856

PROCO28188

OTOGA02732

BOBOX13183

BOVIN10287

CAPHI08342

SHEEP04941

PIGXX26951

TURTR12693

CANLF15871

VULVU18354

MUSPF12861

AILME18660

URSAM03522

URSMA09814

FELCA33712

PANLE29276

RHIFE01156

MYOLU10436

EQUAS14619

HORSE30054

CERSS24673

DASNO16262

MONDO09041

PHACI01750

VOMUR18853

AEGTS37418

WHEAT94681

NELNU24588

MACIN21269

PAPSO06553