OMA group 343196 members

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

OMA GROUP 343196 with 59 members.

Fingerprint: PYTHMAV | NYN domain and retroviral integrase containing

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Members 59

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Alignment

Domains	Taxon	Protein ID	Cross reference	Domain Architectures
E	Loxodonta africana	LOXAF03183	G3TDH7
E	Oryctolagus cuniculus	RABIT06419	ENSOCUG00000015163.3
E	Fukomys damarensis	FUKDA16529	ENSFDAG00000013425.1
E	Heterocephalus glaber	HETGA27607	G5BDS3
E	Cavia porcellus	CAVPO07958	H0VQZ6
E	Chinchilla lanigera	CHILA02680	A0A8C2VFJ0
E	Octodon degus	OCTDE26024	ENSODEG00000001595.1
E	Jaculus jaculus	JACJA13471	A0A8C5LEC9
E	Cricetulus griseus	CRIGR09535	A0A8C2LP51
E	Mus musculus	MOUSE14698	NYNRI_MOUSE
E	Rattus norvegicus	RATNO10110	M0RAC3
E	Nannospalax galili	NANGA14697	A0A8C6R656
E	Ictidomys tridecemlineatus	ICTTR10486	ENSSTOG00000024004
E	Cercocebus atys	CERAT40053	A0A2K5M9W5
E	Chlorocebus sabaeus	CHLSB11339	A0A0D9RTJ4
E	Macaca fascicularis	MACFA38941	A0A2K5VYF0
E	Macaca mulatta	MACMU40646	F6YMT7
E	Macaca nemestrina	MACNE17554	A0A2K6C2J8
E	Mandrillus leucophaeus	MANLE36592	A0A2K6AG95
E	Papio anubis	PAPAN35763	A0A096NXC4
E	Colobus angolensis palliatus	COLAP19984	A0A2K5ISP3
E	Rhinopithecus bieti	RHIBE39286	A0A2K6KMR2
E	Rhinopithecus roxellana	RHIRO17873	A0A2K6QH07
E	Gorilla gorilla gorilla	GORGO08189	A0A2I2YT43
E	Homo sapiens	HUMAN18786	NYNRI_HUMAN

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