OMA group 1417497 members

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

OMA GROUP 1417497 with 24 members.

Fingerprint: CNQNNHI | phenylalanine ammonia-lyase

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Members 24

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Alignment

Domains	Taxon	Protein ID	Cross reference	Domain Architectures
B	Collimonas fungivorans (strain Ter331)	COLFT03437	WP_014007429
B	Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34)	CUPMC00229	WP_011515131
E	Marchantia polymorpha	MARPO23528	A0A2R6XLV2
E	Triticum aestivum	WHEAT29412	A0A3B6CA37
E	Triticum turgidum subsp. durum	TRITD29349	A0A9R1PUD0
E	Eragrostis tef	ERATE18850	augustus_masked-scaf
E	Sorghum bicolor	SORBI24509	A0A921R7H8
E	Zea mays	MAIZE48728	C0PL14
E	Setaria italica	SETIT02526	K3YYN0
E	Setaria viridis	SETVI07228	A0A4U6WCF0
E	Macleaya cordata	MACCD03280	A0A200QI55
E	Actinidia chinensis var. chinensis	ACTCC22157	A0A2R6QAZ8
E	Erythranthe guttata	ERYGU07787	XP_012834755
E	Nicotiana tabacum	TOBAC63711	A0A1S4AWI6
E	Capsicum annuum	CAPAN13521	A0A2G2ZKV3
E	Cucumis sativus	CUCSA19932	A0A0A0KK73
E	Quercus lobata	QUELO16712	A0A7N2N8T3
E	Manihot esculenta	MANES12163	A0A2C9VK23
E	Arabis alpina	ARAAL05524	A0A087H8G1
E	Brassica rapa subsp. pekinensis	BRARP20017	M4EM11
E	Brassica oleracea var. oleracea	BRAOL30787	A0A0D3CLH0
E	Arabidopsis lyrata	ARALY09445	scaffold_301180.1
E	Arabidopsis thaliana	ARATH18671	PAL4_ARATH
E	Eutrema salsugineum	EUTSA24019	V4M9I3

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