OMA group 1390542 members

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

OMA GROUP 1390542 with 13 members.

Fingerprint: FWVINER | D-lactate dehydratase

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Members 13

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Alignment

Domains	Taxon	Protein ID	Cross reference	Domain Architectures
B	Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610)	BURCJ05516	BCAM2110
B	Alteromonas naphthalenivorans	ALTNA01629	ambt_08400
B	Acinetobacter baumannii (strain AYE)	ACIBY01617	A0A0D5YIA9
B	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	PSEPK02948	PP2992
E	Schizosaccharomyces pombe (strain 972 / ATCC 24843)	SCHPO04161	HSP31_SCHPO
E	Aspergillus parasiticus	ASPPA01468	A0A5N6E2U2
E	Aspergillus tubingensis (strain CBS 134.48)	ASPTC09085	A0A1L9MQQ6
E	Penicillium decumbens	PENDC05940	A0A1V6P0C0
E	Penicillium roqueforti (strain FM164)	PENRF06374	A0AAD4WYV9
E	Candida maltosa (strain Xu316)	CANMX01851	M3JW62
E	Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968)	DEBHA02154	Q6BTG1
E	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	YEAST06250	HSP32_YEAST
E	Saccharomyces cerevisiae (strain AWRI796)	YEASA02572	A0A6A5Q2B0

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