OMA group 1356272 members

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

OMA GROUP 1356272 with 64 members.

Fingerprint: IMDVSME | ERCC1-like central domain-containing protein

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Members 64

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Alignment

Domains	Taxon	Protein ID	Cross reference	Domain Architectures
E	Marsilea vestita	MARVE14426	Mvestita_S2g12276.1
E	Picea glauca	PICGL12570	PGL00012909
E	Amborella trichopoda	AMBTC17790	W1PSB0
E	Zostera marina	ZOSMR10852	A0A0K9PJ24
E	Asparagus officinalis	ASPOF13072	A0A5P1FAW1
E	Oryza brachyantha	ORYBR05688	J3N456
E	Oryza punctata	ORYPU05913	A0A0E0M9T6
E	Oryza sativa subsp. indica	ORYSI06959	B8BHW4
E	Oryza sativa subsp. japonica	ORYSJ06228	Q0IWC4
E	Triticum aestivum	WHEAT08030	A0A3B5YWI0
E	Triticum turgidum subsp. durum	TRITD10440	A0A9R0V739
E	Triticum urartu	TRIUA15916	M8A565
E	Eragrostis tef	ERATE40978	maker-scaffold8859-s
E	Miscanthus sinensis	MISSI09075	Misin02G165900.v7.1
E	Sorghum bicolor	SORBI06011	A0A921RZ44
E	Zea mays	MAIZE16566	B4FBX5
E	Setaria italica	SETIT31256	K4AB07
E	Setaria viridis	SETVI46621	A0A4U6SZD5
E	Musa acuminata subsp. malaccensis	MUSAM17922	A0A804JAY8
E	Annona cherimola	ANNCH11924	Anche102Chr3g0023150
E	Magnolia sinica	MAGSI45019	XP_058084743
E	Aristolochia fimbriata	ARIFI05525	H6P81_005525
E	Nelumbo nucifera	NELNU00870	A0A1U7ZHG1
E	Macadamia integrifolia	MACIN45959	XP_042491499
E	Macleaya cordata	MACCD15566	A0A200RD76

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