OMA group 1323829 members

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

OMA GROUP 1323829 with 44 members.

Fingerprint: ANMSWSW | protein IQ-DOMAIN

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Members 44

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Alignment

Domains	Taxon	Protein ID	Cross reference	Domain Architectures
E	Asparagus officinalis	ASPOF21083	A0A5P1FQX2
E	Oryza glaberrima	ORYGL22486	I1Q3L4
E	Oryza nivara	ORYNI29368	A0A0E0HTE2
E	Oryza rufipogon	ORYRU29652	A0A0E0Q024
E	Oryza sativa subsp. indica	ORYSI29133	A2YEY3
E	Brachypodium distachyon	BRADI03672	I1GXC7
E	Triticum aestivum	WHEAT124864	A0A3B6SQF8
E	Triticum turgidum subsp. durum	TRITD84467	A0A9R1A6S4
E	Miscanthus sinensis	MISSI80775	Misin19G182100.v7.1
E	Sorghum bicolor	SORBI02404	A0A194YK44
E	Zea mays	MAIZE94730	A0A1D6P4Y1
E	Setaria italica	SETIT15028	K3XXB5
E	Setaria viridis	SETVI02705	A0A4U6V4T6
E	Magnolia sinica	MAGSI31240	XP_058070773
E	Nelumbo nucifera	NELNU07790	A0A1U7ZHW4
E	Tetracentron sinense	TETSI05620	A0A834ZNU6
E	Beta vulgaris subsp. vulgaris	BETVV00544	BVRB_9g204570
E	Chenopodium quinoa	CHEQI26675	XP_021724542
E	Actinidia chinensis var. chinensis	ACTCC25351	A0A2R6QTB1
E	Daucus carota subsp. sativus	DAUCS23674	A0A164ZVW5
E	Helianthus annuus	HELAN20765	A0A251RXW6
E	Cynara cardunculus var. scolymus	CYNCS14552	A0A103YKG7
E	Coffea canephora	COFCA08508	A0A068TXA1
E	Cucumis sativus	CUCSA21642	A0A0A0K5B0
E	Medicago truncatula	MEDTR29841	G7K7F4

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