OMA: MSA of OMA Group

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

OMA GROUP 1320644 with 110 members.

Fingerprint: QTTCTGK | M-phase specific PLK1 interacting protein

‹

Label

.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140.142.144.146.148.150.152.154.156.158.160.162.164.166.168.170.172.174.176.178.180.182.184.186.188.190.192.194.196.198.200.202.204.206.208.210.212.214.216.218.220.222.224.226.228.230.232.234.236.238.240.242.244.246.248.250.252.254.256.258.260.262.264.266.268.270.272.274.276.278.280.282.284.286.288.290.292.294.296.298.300.302.304.306.308.310.312.314.316.318.320.322.324.326.328.330.332.334.336.338.340.342.344.346.348.350.352.354.356.358.360.362.364.366.368.370.372.374.376.378.380.382.384.386.388.390.392.394.396.398.400.402.404.406.408.410.412.414.416.418.420.422.

LEPOC17565

ANGAN28999

GADMO57641

ESOLU09348

SALSA113730

SALTR39611

ASTMX18549

PYGNA19463

ELEEL10752

ICTPU14954

CYPCA70764

SINGR27640

DANRE29626

LATCH09818

PROCA14719

LOXAF17537

ECHTE08880

RABIT01623

DIPOR19592

FUKDA11163

HETGA03216

CAVPO13601

CHILA15114

OCTDE07570

CRIGR01738

MOUSE12054

RATNO12409

NANGA00030

ICTTR14020

CERAT10995

CHLSB09616

MACFA29433

MACMU33316

MACNE40484

MANLE06425

PAPAN30347

COLAP26100

RHIBE08529

RHIRO06198

GORGO38519

HUMAN88619

PANPA36187

PANTR40107

PONAB33009

NOMLE13173

AOTNA11368

CALJA43186

CEBIM30649

SAIBB17971

CARSF25843

PROCO23896

OTOGA05466

BOBOX16936

BOVIN28291

CAPHI23485

SHEEP15624

PIGXX13008

VICPA02665

BALMU12696

TURTR16478

CANLF05501

VULVU19947

MUSPF18896

AILME17944

URSAM27610

URSMA09979

FELCA04628

PANLE22855

SURSU31610

PTEVA14819

RHIFE27045

MYOLU02808

EQUAS07458

CERSS30324

MANJA11774

DASNO02138

CHOHO12056

MONDO29304

NOTEU09598

PHACI24606

VOMUR19895

CROPO01435

HALLE22381

FALTI14279

ANAPP08304

CHICK11848

PHACC19856

CORMO08614

PARMJ14428

JUNHY00889

TAEGU17760

SERCA01865

CHLGU02292

STRHB16144

MELUD12723

TYTAL34816

CHRPI11761

CHEAB03476

SPHPU15522

LACAG27766

VARKO07678

SCEUN29502

THAEL28072

PSETE08610

NAJNA29839

PROMU06355

BUFBU21424

XENTR27389

IXOPE22824

IXOSC14741