OMA group 1302645 members

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

OMA GROUP 1302645 with 38 members.

Fingerprint: ATENMPH | BHLH domain-containing protein

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Members 38

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Alignment

Domains	Taxon	Protein ID	Cross reference	Domain Architectures
E	Taxus chinensis	TAXCH22576	A0AA38GB82
E	Asparagus officinalis	ASPOF17305	A0A5P1F9B6
E	Oryza brachyantha	ORYBR25989	J3MLV0
E	Oryza glaberrima	ORYGL24586	I1QBF0
E	Oryza nivara	ORYNI31723	A0A0E0I239
E	Oryza rufipogon	ORYRU32395	A0A0E0Q9M8
E	Oryza sativa subsp. indica	ORYSI31716	B8B781
E	Oryza sativa subsp. japonica	ORYSJ28983	AAX55226
E	Brachypodium distachyon	BRADI02558	I1GTM5
E	Hordeum vulgare subsp. vulgare	HORVV34535	HORVU2Hr1G042710
E	Aegilops tauschii	AEGTA30656	M8D773
E	Aegilops tauschii subsp. strangulata	AEGTS10575	A0A453BBG0
E	Triticum aestivum	WHEAT27247	A0A3B6C445
E	Triticum turgidum subsp. durum	TRITD31890	A0A9R1PK83
E	Miscanthus sinensis	MISSI23052	Misin04G316000.v7.1
E	Zea mays	MAIZE30947	C0PJM5
E	Setaria italica	SETIT07549	K4A1H4
E	Setaria viridis	SETVI13927	A0A4U6VYU0
E	Musa acuminata subsp. malaccensis	MUSAM05434	A0A804J2K3
E	Persea americana	PERAE22394	MRB53_022451
E	Annona cherimola	ANNCH06419	Anche102Chr1g0107330
E	Aristolochia fimbriata	ARIFI06406	H6P81_006406
E	Macleaya cordata	MACCD17524	A0A200QMH3
E	Daucus carota subsp. sativus	DAUCS03336	A0A161XJ67
E	Cajanus cajan	CAJCA23627	A0A151S0W5

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