OMA group 1276640 members

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

OMA GROUP 1276640 with 26 members.

Fingerprint: ERGAMTM | Derived by automated computational analysis using gene prediction method Gnomon

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Members 26

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Alignment

Domains	Taxon	Protein ID	Cross reference	Domain Architectures
E	Physcomitrium patens	PHYPA30995	A9RGH1
E	Ceratopteris richardii	CERRI00421	A0A8T2VIQ3
E	Picea glauca	PICGL23664	PGL00024337
E	Pinus taeda	PINTA22466	PTA00064652
E	Taxus chinensis	TAXCH31669	A0AA38CLV4
E	Zostera marina	ZOSMR21978	A0A0K9NQD8
E	Papaver somniferum	PAPSO32460	A0A4Y7JRE0
E	Chenopodium quinoa	CHEQI40185	A0A803LTG9
E	Nicotiana attenuata	NICAT17550	A0A1J6K9Z1
E	Nicotiana tabacum	TOBAC30174	A0A1S3XFM7
E	Solanum tuberosum	SOLTU41740	M1AV60
E	Manihot esculenta	MANES01373	cassava4.1_016016m
E	Prunus dulcis	PRUDU14764	A0A5E4F7P8
E	Prunus persica	PRUPE23351	M5XI29
E	Arabis alpina	ARAAL00427	A0A087HLB3
E	Brassica rapa subsp. pekinensis	BRARP36475	M4EUH1
E	Brassica napus	BRANA83921	A0A078FD85
E	Brassica oleracea var. oleracea	BRAOL47150	A0A0D3DYU7
E	Arabidopsis lyrata	ARALY00533	scaffold_100568.1
E	Arabidopsis thaliana	ARATH00823	RAA5E_ARATH
E	Theobroma cacao	THECC14804	A0A061EIR4
E	Gossypium arboreum	GOSAR13800	A0A0B0NHX7
E	Gossypium hirsutum	GOSHI02131	A0A1U8LHJ0
E	Gossypium raimondii	GOSRA36232	A0A0D2N6V0
E	Nymphaea colorata	NYMNZ20996	XP_031492487

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