OMA group 1072430 members

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

OMA GROUP 1072430 with 139 members.

Fingerprint: MIGGPGQ | collagen type IX alpha

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Members 139

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Alignment

Domains	Taxon	Protein ID	Cross reference	Domain Architectures
B	Mycobacterium asiaticum	MYCAS02648	A5636_17010
B	Mycobacterium marinum (strain ATCC BAA-535 / M)	MYCMM01143	WP_012393044
B	Mycobacterium africanum (strain GM041182)	MYCA003360	PE_PGRS51
B	Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)	MYCBO01141	PE_PGRS51
B	Mycobacterium bovis (strain BCG / Pasteur 1173P2)	MYCBP03380	A0AAE8WM95
B	Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019)	MYCBT03381	A0AAE8WM95
B	Mycobacterium canettii (strain CIPT 140010059)	MYCCP03359	WP_014001708
B	Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra)	MYCTA03432	A0A9P1LH87
B	Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)	MYCTU03391	Rv3367
B	Mycobacterium tuberculosis (strain CCDC5079)	MYCTC03087	CCDC5079_3115
B	Mycobacterium tuberculosis (strain CCDC5180)	MYCTD03034	CCDC5180_3069
B	Mycobacterium tuberculosis (strain F11)	MYCTF03304	A0A9P1LH87
B	Mycobacterium tuberculosis (strain KZN 1435 / MDR)	MYCTK03460	A0A9P1LH87
E	Callorhinchus milii	CALMI18278	A0A4W3KHA4
E	Lepisosteus oculatus	LEPOC14384	W5LZT6
E	Anguilla anguilla	ANGAN30243	XP_035287179
E	Anabas testudineus	ANATE05570	ENSATEG00000002516.1
E	Seriola dumerili	SERDU08363	A0A3B4TGQ3
E	Echeneis naucrates	ECHNA18276	A0A665TCH4
E	Cynoglossus semilaevis	CYNSE13879	A0A3P8W593
E	Scophthalmus maximus	SCOMX20009	ENSSMAG00000016298.1
E	Dicentrarchus labrax	DICLA49486	A0A8P4GLB6
E	Gasterosteus aculeatus	GASAC05757	G3NWM7
E	Sparus aurata	SPAAU22202	A0A671TVI0
E	Mola mola	MOLML09346	A0A3Q3VSC5

Showing 1 to 25 of 139 rows rows per page