Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E1034645.2b.2e.2c.6a.6a.2a.4a with 10 members (Derived by automated computational analysis using gene prediction method Gnomon)

LUCA / Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia /

... /

Chordata / Vertebrata / Gnathostomata / Euteleostomi / Neopterygii / Teleostei / Clupeocephala / Euteleosteomorpha / Acanthomorphata / Percomorphaceae / Ovalentaria /

Atherinomorphae /

Completeness score: 1.00

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

76.6%

This HOG has 3040 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0522900	Gastropoda	12		100.0%	3
HOG:E0524560	Gastropoda	4		75.0%	3
HOG:E0423606	Pleosporineae	5		80.0%	2
HOG:E0763172	Bilateria	5		80.0%	2
HOG:E0769279	Bilateria	3		66.7%	2
HOG:E0769290	Bilateria	3		66.7%	2
HOG:E0991468	Bacteria	6122		34.8%	1
HOG:E0990773	Bacteria	5674		97.6%	1
HOG:E1028373	LUCA	4823		99.3%	1
HOG:E0990931	Bacteria	4578		27.8%	1
HOG:E0990805	Bacteria	4059		87.3%	1
HOG:E0807509	Eukaryota	3971		91.9%	1
HOG:E1027312	LUCA	3739		78.0%	1
HOG:E1027829	LUCA	3222		99.0%	1
HOG:E1027393	LUCA	3204		99.3%	1
HOG:E0992123	Bacteria	3122		99.5%	1
HOG:E0990818	Bacteria	3087		56.7%	1
HOG:E0990876	Bacteria	3026		99.3%	1
HOG:E0802848	Eukaryota	2930		94.4%	1
HOG:E0990760	Bacteria	2928		45.1%	1
HOG:E0805484	Eukaryota	2665		39.7%	1
HOG:E1027415	LUCA	2512		99.5%	1
HOG:E1030322	LUCA	2473		99.7%	1
HOG:E1028213	LUCA	2392		99.0%	1
HOG:E1028420	LUCA	2383		98.4%	1

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