Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E1033999.2b.10i with 19 members (Derived by automated computational analysis using gene prediction method Gnomon)

LUCA / Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia /

... /

Chordata / Vertebrata / Gnathostomata / Euteleostomi / Neopterygii / Teleostei / Clupeocephala / Euteleosteomorpha / Acanthomorphata / Percomorphaceae /

Ovalentaria /

Completeness score: 1.00

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

49.6%

This HOG has 180 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0314009	Embryophyta	593		81.3%	3
HOG:E0319208	Streptophyta	510		85.5%	3
HOG:E0294356	Magnoliopsida	68		61.8%	3
HOG:E0273014	Pentapetalae	35		77.1%	3
HOG:E0213378	Poaceae	34		47.1%	3
HOG:E0213227	Poaceae	18		55.6%	3
HOG:E0198403	Oryza	15		46.7%	3
HOG:E0282780	Mesangiospermae	15		40.0%	3
HOG:E0236287	Malvaceae	10		50.0%	3
HOG:E0321601	Viridiplantae	8		37.5%	3
HOG:E0743524	Euteleostomi	6		50.0%	3
HOG:E0475618	Pezizomycotina	37		54.1%	2
HOG:E0828231	Eukaryota	24		75.0%	2
HOG:E0268418	Pentapetalae	23		39.1%	2
HOG:E0489249	Cnidaria	18		66.7%	2
HOG:E0308404	Euphyllophyta	12		91.7%	2
HOG:E0145788	Sar	10		90.0%	2
HOG:E0511068	Ostreidae	9		77.8%	2
HOG:E0275185	Pentapetalae	8		37.5%	2
HOG:E0740251	Euteleostomi	7		57.1%	2
HOG:E0764371	Bilateria	7		42.9%	2
HOG:E0770352	Bilateria	7		28.6%	2
HOG:E1018764	Bacteria	7		85.7%	2
HOG:E0175597	Acrogymnospermae	6		33.3%	2
HOG:E0654569	Protostomia	6		50.0%	2

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