Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E1033214.3a with 28 members (uridine phosphorylase)

LUCA / Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Protostomia /

... /

Ecdysozoa / Panarthropoda / Arthropoda / Mandibulata /

Pancrustacea /

Completeness score: 0.33

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

98.0%

This HOG has 185 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0992259	Bacteria	2928		99.2%	1
HOG:E0990796	Bacteria	1575		99.9%	1
HOG:E0802334	Eukaryota	810		97.7%	1
HOG:E1027344	LUCA	803		97.8%	1
HOG:E1039915	LUCA	325		100.0%	1
HOG:E1032925	LUCA	259		47.5%	1
HOG:E0820902	Eukaryota	253		97.2%	1
HOG:E1033495	LUCA	164		98.8%	1
HOG:E0654308	Protostomia	137		96.4%	1
HOG:E0434692	Aspergillus	123		95.1%	1
HOG:E0807538	Eukaryota	120		98.3%	1
HOG:E1029393	LUCA	98		100.0%	1
HOG:E0008993	p__Thermoproteota	78		100.0%	1
HOG:E0461852	Sordariomycetes	60		23.3%	1
HOG:E0458911	Hypocreales	58		96.6%	1
HOG:E0458825	Hypocreales	56		23.2%	1
HOG:E0866903	c__Campylobacteria	54		100.0%	1
HOG:E0994457	Bacteria	47		97.9%	1
HOG:E0858993	p__Desulfobacterota	43		90.7%	1
HOG:E0268220	Pentapetalae	39		100.0%	1
HOG:E0459368	Hypocreales	35		97.1%	1
HOG:E0481092	Dikarya	34		17.6%	1
HOG:E0020239	Archaea	33		100.0%	1
HOG:E0911268	c__Actinomycetia	33		100.0%	1
HOG:E0471812	leotiomyceta	31		35.5%	1

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