Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E1027769.2h.8c.15b.28a.20a with 2 members (glucose-6-phosphate 1-dehydrogenase)

LUCA / Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia /

... /

Chordata / Vertebrata / Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Amniota / Mammalia /

Monotremata

Completeness score: 1.00

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

95.4%

This HOG has 3851 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E1027400	LUCA	5561		94.9%	2
HOG:E0990874	Bacteria	5256		96.6%	2
HOG:E0990965	Bacteria	3722		99.7%	2
HOG:E1027447	LUCA	1896		98.4%	2
HOG:E1030657	LUCA	1460		81.8%	2
HOG:E0990665	Bacteria	1099		57.3%	2
HOG:E0793261	Opisthokonta	1013		96.7%	2
HOG:E0935112	c__Bacilli	865		97.6%	2
HOG:E0801611	Eukaryota	834		92.2%	2
HOG:E0803402	Eukaryota	751		97.6%	2
HOG:E1027515	LUCA	591		97.8%	2
HOG:E0993555	Bacteria	584		45.5%	2
HOG:E1027461	LUCA	565		97.9%	2
HOG:E0802870	Eukaryota	483		0.4%	2
HOG:E0807709	Eukaryota	472		37.7%	2
HOG:E0794470	Opisthokonta	450		92.4%	2
HOG:E0979157	f__Enterobacteriaceae	425		99.8%	2
HOG:E0802355	Eukaryota	418		89.5%	2
HOG:E0804984	Eukaryota	412		92.7%	2
HOG:E1038730	LUCA	310		100.0%	2
HOG:E1027453	LUCA	301		96.0%	2
HOG:E0951254	c__Alphaproteobacteria	297		99.7%	2
HOG:E1028147	LUCA	285		69.8%	2
HOG:E1027826	LUCA	274		91.6%	2
HOG:E1027457	LUCA	233		100.0%	2

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