Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E1027587.10b.30e.23e with 13 members (HAD-superfamily hydrolase subfamily IIA)

LUCA / Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Protostomia /

... /

Lophotrochozoa / Mollusca /

Gastropoda /

Completeness score: 1.00

‹

Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

96.4%

This HOG has 1225 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0804664	Eukaryota	1829		34.2%	2
HOG:E0805560	Eukaryota	1345		32.2%	2
HOG:E0803352	Eukaryota	1022		94.6%	2
HOG:E1033359	LUCA	351		97.7%	2
HOG:E0822328	Eukaryota	339		95.9%	2
HOG:E0778094	Eumetazoa	230		97.8%	2
HOG:E0630459	Endopterygota	113		97.3%	2
HOG:E1036243	LUCA	107		40.2%	2
HOG:E0995712	Bacteria	91		31.9%	2
HOG:E0815261	Eukaryota	60		46.7%	2
HOG:E0628850	Diptera	46		8.7%	2
HOG:E0396362	Basidiomycota	39		92.3%	2
HOG:E0141520	Apicomplexa	22		77.3%	2
HOG:E0263012	rosids	22		27.3%	2
HOG:E0655061	Protostomia	21		81.0%	2
HOG:E0272146	Pentapetalae	20		25.0%	2
HOG:E0268341	Pentapetalae	18		22.2%	2
HOG:E0651892	Ecdysozoa	17		70.6%	2
HOG:E0139399	Plasmodium	15		86.7%	2
HOG:E0561808	Rhabditida	15		53.3%	2
HOG:E0820409	Eukaryota	15		53.3%	2
HOG:E0807579	Eukaryota	14		42.9%	2
HOG:E0066062	Metakinetoplastina	13		100.0%	2
HOG:E0008613	c__Thermoproteia	12		83.3%	2
HOG:E0021225	Archaea	12		100.0%	2

Showing 1 to 25 of 1224 rows rows per page