Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E1027388 with 6 members (protein pelota homolog)

LUCA / Archaea / p__Thermoproteota / c__Thermoproteia / o__Sulfolobales / f__Desulfurococcaceae /

Completeness score: 1.00

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

93.8%

This HOG has 133 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E1027263	LUCA	1240		86.0%	2
HOG:E0830071	Eukaryota	11		81.8%	2
HOG:E0826177	Eukaryota	7		71.4%	2
HOG:E0291007	Mesangiospermae	7		57.1%	2
HOG:E0231994	asterids	5		40.0%	2
HOG:E1027408	LUCA	1317		98.6%	1
HOG:E0801915	Eukaryota	1150		99.0%	1
HOG:E0801709	Eukaryota	948		99.4%	1
HOG:E0777963	Eumetazoa	673		99.6%	1
HOG:E0803048	Eukaryota	328		68.6%	1
HOG:E0780258	Eumetazoa	278		58.6%	1
HOG:E0995471	Bacteria	277		100.0%	1
HOG:E0889645	p__Bacteroidota	216		91.2%	1
HOG:E0995576	Bacteria	195		100.0%	1
HOG:E0749035	Gnathostomata	191		100.0%	1
HOG:E0017550	Archaea	172		100.0%	1
HOG:E0755429	Chordata	166		98.8%	1
HOG:E0754104	Vertebrata	157		100.0%	1
HOG:E0746429	Gnathostomata	149		100.0%	1
HOG:E0988194	p__Proteobacteria	129		69.0%	1
HOG:E0746332	Gnathostomata	127		100.0%	1
HOG:E0785248	Eumetazoa	125		100.0%	1
HOG:E0830915	Eukaryota	115		100.0%	1
HOG:E0732744	Amniota	105		99.0%	1
HOG:E0315312	Embryophyta	96		3.1%	1

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